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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0315000.1

GCCACCTATTTTTCTCAGCCTGGGGCTGTCACATAGGACGAAGACACAAGAAGAATAATACTTGCCACAAGTCTCACAGTGCTACATAGCCTCAAAGAGTAGCCACACAAATAAAAAAAATCATTTCTTTCTCCCTTATCCTCAGTCCGCTCCCCACCTACGCGCGCTTCTCCATCTCCGCCCACGCGCCTCGCCCCTTCTCCTCTCGCCGCACTTCCCCTTCCTCCTCCGGCGCGGCGGCGGCGCCGAACCACCCAGTTGCGGCGTCGAGCGGCGCGGCGGACGGGCGGCAGCGTGGAGCAGCGCAGTGGAAGGGTGGCGGCACGAACGGCCCGAGCGGCAACGCCAGAACTGGTCAACGGGGTGGCTCAAGCGCCTCCCCTCCTCCTCCTCTTCTGGCGCCGCGGATCGAGGGGCAGCGGCGGCGGCCGGCGGGACGGCCCGAGCGGCGGCGGGGTGGTCGAGCGGCGGCTCACATGATCAATACTCCCTCCGGCCACCTCCCTCGGCTCCCTCCCCTCCCCGTCCCCTCCGGCGGCGCTGGGCACAGGCCTCACCCTCTCCTCTTCCCGGCGGACGACGGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCGGCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGTCCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGCGACGCCCGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTCCTCTCCCCGGCAGCGTCGGGCGGTGGAAGCGAGCGGGGTTTGGGGCGGTAGGACGACACGGCCCACGAGTGTGGGCCCCACCTGTGAAACAAAGGAGGAACGGGGAGCCAAAGTTGGCTCCACGGTCTTGGGCAAGCCGCGTGGATTGCCGACGTGGGGACGAATATTCCGTTTCTAGGGGTGAGGCTGAATGCCACATGGGAGCATTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTACTAACTCCAAATCATCTATATCCAATGTAATAGCCAATTTATACAATAGTTGCTTGCTACACTATTAATATCTGGTCCCACCTATCATACACATATTACGTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATATGTAGCCCGCTTCTCTTC

Coding Potentia
Explanation CPC Score
noncoding -1.00432
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0315000.1 5 23668245 A G
Osa05LNT0315000.1 5 23668250 G A
Osa05LNT0315000.1 5 23668404 A G
Osa05LNT0315000.1 5 23669039 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0315000.1 osa-miR394 Translation 5.0 21.651 1 20
Osa05LNT0315000.1 osa-miR2118e Translation 4.5 20.756 1 22
Osa05LNT0315000.1 osa-miR2118r Translation 4.5 20.756 1 22
Osa05LNT0315000.1 osa-miR2919 Cleavage 4.0 22.89 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0315000.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0315000.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0315000.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
Osa05LNT0315000.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0315000.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0315000.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0315000.1 5 qRFC-5 Physiological trait Eating quality RG470 RG474
Osa05LNT0315000.1 5 Eui Morphological trait Dwarf nan nan
Osa05LNT0315000.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0315000.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0315000.1 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0315000.1 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0315000.1 5 APAGE1 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus