© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0028300.1
CGTCGAAGTCGCACAATACCATCATTCATACCATAACCAGAATAACAGCATGCTTCTGAATGAAGCTTAACTGAAGTTTACCATGATTAATAACTGTTGTGCAGGTAGTTCAGTGGAATATAAGCTACTTCATACCTAAATATGGGGTAGAGTGGCTAGTCTTGGTGGTCCCAAATCACCAGAGTATTTACATCAGTAGATTAGACATGTCCATCTTGGACCCAAATGAGACGATACCAACGAGGTTGGTATGTACATAACATAAAGATATGAGCCAGACCAAAAGCAAAATGACCAGGTGCATTAGCATACTGTACTTCCTTGAAGCTTTCTCCATGTCTGCAAAAATGAAAAAAAAAACGCAAATCAAGTGACATAATTGCTTGGCTAGATTAGTCATCAGAAACACAACTGCACATAGCCCAAGACCATAGAAGGCCAACCAGTTTGCAAAAATAGACTCAATTTACACCGATAGGTCATTGAAACCTTCTAAACAAATAAGCACCCACTGATGTTGATGTCAAATAACTCCTTTACTTACACAAGGAAGAAGGGTATCAAGACATTGAAAACACAATCAGTAGTTTCAATTGTCTAGAAAGTTTGCAATTGTTTATACTAAAGAATCTAGTTTCTGGGGACATTCTTATATATCAATCAGTAACTATCCGCAACTATATTTCCAAAGGAATCTTGCATTTCCATCATTTAAGCAGTTTGCACACAAAAAAGTTTTAACAAGGATAAGAAAAGAGAATGGCATGGCTTCACGTGTAAAGAGAAGAGTCTAAAATTAAATGAACAGGCAGGCAATTCATATCATGGTGTTACATGGAATGGAAAGCAATAAAATGCATCGCAGCTTGGAAACACATAAGAATAATGAAATGAATAAACTTAAAACAGAACAAAACAAATACTAGCTAGCAGAGGCAAACTGACGTTATGCAATTCACTTTACAAAATGCAACATCATAGACTTGACACTTCTAAAAAAACAATGCACTCTACATCAGTTGGCACATCATTTGGGCTGTTTACCTATACCACAAACCTAAAGTTCACTAATTCAATCATAAACGTATACTCTAATAGAAGCATCTCCACCCTTCCCCCCCCCCCCACCAAAATGTACCCTGCAGTTATTAACTGCAACAGTAAGCCAACATGGTAATATAACTAAACAAAAATAAATTGCTTATAAGCATAGCCAGTATACATGTGTAGTATATTTTATTCTATTCTATCATACGGTCTGAGAGAAAAACAACAATGTCCAAACGGCATACTGGTAAATGAGAACAAAATCACCTCAATTTTTGACATTGATAGGTCATTGGGCTTGTTTTTTCTTTGCTTGATGCCCTCAAAAACCATTAAAGTACAAACTTGCCCATTTGAGTTATTATATATCCCCTTGGCAACAAATGGACGCAGCTGCTCTTAAGCAATGTGAACCTTACCAGCAAGCTCTTCCTAAAAGGATATCAGTATATCACAACTAAACTACTGCCTCCACAGATTAGAACCTCAAGTCAGCATCACGATGGAATATGGAGATAACAGTGATTACTTCTAAACGGAAATCTTGTATGGTAAAGGCAGATCAACAACTAAAAGATGGCAAGGTAAATTAGAGGTGAGAAAGGTCAGTCAATCAATCTATAATGATCACTTGAGCAAGCCCGACAGCAACTTGATCAGTTCCTTCTCCAGGCCACGCCCCTGCAAAGACACCCTGACCTGAGCCAAAGTCAGCTGCTTGATCTTAGCATCCAAGGCACTGGCCTTGCTGTCAGCAAGCTTCAAGAAAGCCTCCTTAAACTAGTCGAGATGATCTTCATCCAGAATTGAAACCACCTTCCCAAGGAAAAAGTAGAAGGCCTTCTCCTTGAATTGCCTGTCTATGTCTGTGTTTCTCCTGCTATGCTTATGGCTGTCCCCTTTGGCTGAGGCCTCCATATTCTTCTTCTTGTGCTGCTGAGGAGACTCACCGACCTCGGGCATCACCGGAATCGGACTCTTGGTCGTCATCCTCATCATCATCGGACGGAGGCACATTCTTGTTGGCCTGAAGCGCTGGGTTCGGCACCGGCAGCGCCTCGTCGTCACTGGAATCGGACTTTTGGCCGTCATCGGAATCAGAATCAGATTCAGACTCTTGGTTGTTCGGCGGCGGCGGTGGCGGTGGCGGGGCGACGAGGGGGGCTTTCTTGGTGGGCGTCCCATGCGGCACAAGTTCCTCGAGGACTCGAGCTCCACCTCGTCGTCCCATGCCGCAGGAGCTGAAGGAGAAGACCGAGACCTTCAATGGGAAGAAGAAGACGTCGCCGCCGGAGGTCGGTGAGTCTCTTCAGCAGCACAAGAAGAATAATATGGAGGACAGCCATAAGGAGAAACACAGACATAGACAGGCAATTCAAGGAGAAGAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0028300.1 | 1 | 25326321 | T | C |
| Osa01LNT0028300.1 | 1 | 25326507 | C | G |
| Osa01LNT0028300.1 | 1 | 25326631 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0028300.1 | osa-miR1860-3p | Cleavage | 5.0 | 12.495 | 1 | 22 |
| Osa01LNT0028300.1 | osa-miR2055 | Cleavage | 0.0 | 18.843 | 1 | 21 |
| Osa01LNT0028300.1 | osa-miR2055 | Cleavage | 4.5 | 9.479 | 1 | 21 |
| Osa01LNT0028300.1 | osa-miR2880 | Cleavage | 3.5 | 14.222 | 1 | 24 |
| Osa01LNT0028300.1 | osa-miR5144-5p | Cleavage | 0.0 | 22.757 | 1 | 21 |
| Osa01LNT0028300.1 | osa-miR5502 | Translation | 5.0 | 16.668 | 1 | 22 |
| Osa01LNT0028300.1 | osa-miR5507 | Cleavage | 4.5 | 18.213 | 1 | 21 |
| Osa01LNT0028300.1 | osa-miR1861d | Cleavage | 4.5 | 12.937 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0028300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0028300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0028300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0028300.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0028300.1 | 1 | nan | Morphological trait | Seed | CDO118 | CDO455 |
| Osa01LNT0028300.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0028300.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0028300.1 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0028300.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RM129 | RM5 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa01LNT0028300.1 | osa-MIR5144 | 100.0 | 423 | 1 | 423 | 0.0 | 782 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)