>Osa05LNT0315600.3

CTCGTTGACAATAAATTTAGCACATCAAAACTATAAATATGAAATATGCTTAACACTTTTTGGATAAAGCGAATATCATTTACTAATCATTACAGAAATGTTCCGGCATCTTAAACACTCCCATCGTGTAGATGGGTAGGGCTTGAGCTACAGGTCATTCGATTTCAAACGTAATTCGTAAGATTGAAAAAAACATCGACTGACAAATAATGATAAATTAATCACACTTGAAAAAAAAATGGGGTTTTTTTAACTCATCAGTAGCTAGTATATATATATATGTGAGCGATGAAATCATATGTATAATATAACTCCACCATTACAATGGTTTTTAGAGGGCATATCGAAATTACATCCAGCTGACGACGACGGCGCTCAGCTTCTTCATAGGACGTACGTTTCAGTTTCCACTCCTCTTTTGTTCTTCTTTTCGCGGGGACATGCAATAAGCACGAGCCCAAATTAAGTTGATTATTTCGCCAGATTAAGCAAAAGATCACAAAAAATGTCAAGAACAAGAGAAGAATGTCATCGGGTTCAGTACATATATGCATCGATCGATGAATTAGGCCGGGAGGTAGGACGGCGGCAGCGGCAGGCCGACGACCTTGCCGCAGCGGAGGGCGTTCTCCGGCATGTTGTACTCGTCCCGGAGCGACCTCGCCGGCGAGACGACGCTGATGTAGAGCTGCTCGCCGAGGTAGTGCCTCTCCCAGATGTTGGACCTCACGTTCCACATCCCGGCGTTGTCGAACGTCAGCATGATCGCCGTCCACGACCTCGGGTACACCTGGACCGAGTGCCGGCTCACCCCGTCCAGCAGGTTGTACGTCTTCCTCTCCTCCGCCGACCACTTCCCCGGCCCCATCCCGACGGCGAAGAAGGCGTAGCCGTCGAGGTGGACGGAGTCCATGCTCTTCTCGGGGTTCTCGAAGATGATCTCGATGAAGGTGCGGAACTCGGCGGTGATGACGTTGGGGACGACGTGGAGGGGGCCATTGACGGCGGGCGGCACGTCGGTCATCTGGTTGTACCTGAAGACGCCGTCGGTGACGTTGAAGTACTCGGCGAGCTTGAGCGGCGTCTCGGCGTCGACGTGGGAGACGCCATTGAAGCCGTACTTGAGCTTGCCGTCGATGTGGCCCCGGGAGACCATGAGCCTGATGGTGCGCGTGATGTTGATCTGGCCGTAGTGGTAGGACCCCTGCGGGTTGGGGCGGGCGGCGCTCGCCGTCAGGTTCCACCGGAACGACCTCCACTGGTTGATCGACCACGCCCATCCCGCCGGCGGCTCCGGCACGGCCGGCGACGGCGGCGTGCTCGAGCCGGCGTAGCGGATGACGGCTGACACCGACTTGGCCTCGTGGATGAACCGCGTGGACGCCACCGCGTAGTAGTCGCCGGGCTTCTGGTCGGCGTCGACGAGGACGGAGAGGCAGTGGCCGACGTGGACGTCGAGGGAGTCGTACATGTCCTGCACCGTGTGGGAGCCCTCCATCTCCACCAGCTTCATGTCGTGGCCCTGGATGCGGAAGTTGAGCGACGCCTTGATGCCGACGTTGCAGACGCGGAGCCGGTACGTCTTGCCGGCCTCGACGGTGAACATGGGCGGGTCGGCGGCGGCCTTGCCGGACTTGCCGTTGATGACCACCCCGTGCGGGCGGCCGAAGCTCTTGCCGGCGTCGAGCATCTTGGCCATGGCGGCGTGGTCCTTGGTGTACCAGTCGCCGATGAGCACCATGTGGTCGTCGGCCGGCGGGTCGAACGGGACCGGGATGAGCAGGCGGCTGACGACGCTGATCCCGCCGTAGCCGCCGGCGGCGCGGTGCATCCCCAGCGACGGGAAGTAGAAGAAGCTGCCGATCTGGTCCTTGGGCTGCCACTTGTACGTGTAGTTGGTGCCCGGCGCGATGGGGCACTGCGTCCCGGCGAGGCCGTCCTGCCACGAGTTCTTGCGGTGCTGCATCCCGTTCCAGGTGAAGAGCAGCGGCTCGTCCAGCTGGTTGAACACGTTCACCACGATGTTGTTGTTGGACGAGCAGTTGATCCGCGGGCCCGGGAACTCGCCGTTGATCAGGATCACCTTCTGCGGCGCGTCCAGGAGGGTCTTGGTGCCGTACGTCACCTTCCACTCGAAGAACACGTACGGGTCCTCGCCGCGCGCCACGCCGGCCAGCGCCGCCGCCACCAGCAGCACGCCGGCGGCGGCGGCCGCCACTCGCGTCGTCGTCGTCAT

Explanation	CPC Score
noncoding (weak)	-0.193847

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0315600.3	5	23883094	A	G
Osa05LNT0315600.3	5	23883419	G	A
Osa05LNT0315600.3	5	23884022	T	C
Osa05LNT0315600.3	5	23884034	A	G
Osa05LNT0315600.3	5	23884081	A	G
Osa05LNT0315600.3	5	23884278	A	G
Osa05LNT0315600.3	5	23884370	G	A
Osa05LNT0315600.3	5	23884476	G	C
Osa05LNT0315600.3	5	23884563	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0315600.3	osa-miR6252	Cleavage	4.0	8.526	1	23
Osa05LNT0315600.3	osa-miR162a	Translation	4.5	20.736	1	21
Osa05LNT0315600.3	osa-miR162b	Translation	5.0	20.736	1	21
Osa05LNT0315600.3	osa-miR5514	Cleavage	5.0	24.504	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0315600.3	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474
Osa05LNT0315600.3	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0315600.3	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0315600.3	5	nan	Resistance or Tolerance	Drought tolerance	C43	RZ70
Osa05LNT0315600.3	5	nan	Resistance or Tolerance	Drought tolerance	C43	RZ70
Osa05LNT0315600.3	5	APAGE1	Physiological trait	Eating quality	nan	nan
Osa05LNT0315600.3	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346
Osa05LNT0315600.3	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0315600.3	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0315600.3	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0315600.3	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0315600.3	5	nan	Physiological trait	Eating quality	RM163	RM31

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus