>Osa05LNT0315800.1

AAAACGTAACATGGAGGTGTATTTCTTATACTATACAATTGTATGCTAATCACATCTGGTTTATTCCTGATCATCGTCAGTCCTTCAAATACTCACAGACGATGGAACGTAAGGAACAAAACATGGAGTACACCCTTCATTGGTTAGGGGCCCAAAGTTGCCAGTAACGAGGCCTTCAAGGTCCATGGCGACGACGCGCTCCTCCAAGGGTTCCCAGACAACGACCTCTGCGGCGCCTTGTGAGCGGAGCAACATAGCCCTTTTGCCAACCTTCTCCCCGGAGAATGAGCCGACAACTGTCCAGAGTGCAGCAACCTTATCATCAAACAGTCGCTTGTTTATTTTAAGCACGCCCAATGTGAGGAAACCGTCAACATCCTTGAAGCAGGTCACAGTAAGATCTCCCTCCATTTGCCCAAGCTCCCATACGGTATCTTGGTTTACCACTCGAGGGGCAGGGATGACTTTAAGGAGGTCCTTCCCCGGGTCATAGCAGAGGATAGACCCAAGGGAAGTGCGCCAGAAGGCGCAGCCCAGTGTACCAACACCAGACTCCGCCTTCACCTCCACAGCAGGAGGGGCATCTTTAGCAATAGTCCACCTCCCAGTCCTGGAGGAGTATGACTCAGATGTCCAGACGCTGCCCTTGAGGTGGAAGGCAGCGACGACATGATAATGCTCAACAGCACCGTCGAAGCAGGATGTCAGGGGTTCCTCGAATGTGATGACAACTGCTGGTTCTCCATGATCACAACTGTGGCGTGGTAGCTGAACCCACTTGAAGGTGGTCGTGTTGGTTACATAGTACAAGCCTGTTGTCTTTCCACAGACGCAGACAAGGCCACGCGTGGATGCAAGGAAAGATACGGGCTCTGGTAATGCAGCAAAGCGTGACTCAGGGTAAAGAAGCTTGCCGCAGCGTATGGTGTCAAATGCGAGATACCCAGGCTCCTTACATAATGTGTTGAAAAAGAAGCCTGAGAGCGGCCTTGAAGCGGTACTTTCCAGTGGAGCATCCTCATCACACAGTTTATTTATCATCAATTCATTTTTTTCAAGCAAACTTCTCAGCACATCCTGTAGAGGTCCTCCTTTCGAGTTTGGAGCAATTTCAATGACCTTTCCATCCCTAATTATGTTACCAATCGCAGCAGCTTCAATTGAAGCTAACTGATACTCTAAATAAACAAAAAAAATAATGAAATGTAAATTTATAATTAGTTCAGATTTCATCAATATAAAATGCATACCTGTCCAATTAATTCTACAAGATAAAGCAGCAACTTCCATCTCATCCAGAATTTCATCAATATAAAATGCATACCTGTCCAATTGATTCTAGAAGCTAAAGCAGCAACTTCCATCTCGTCTAGAATATCATCCCTTCTGTTAGCTCTACTTTGAATTATAGCACAATTTCTGTTAGCTCTACCTTGAATTATAGCACAATTTTCTGGAGTGTTAAGACCACCATGTCGGTCAGGAGGCGACGGCGCGGGCTCCGACCGTTCCGTCGATGCGCCTGTGCCGGCACACCGATGAGACGTCGGACGCCGGCGGTCGGACCTCGATCTGTCGGTCAGGAGGCGACAGCGCGGGCTCCGACCGTTCCGCCGATGCGCCTGTGCCGGCGATATGGACGTCAGGAGGCCGGCGTCGGAGGCCCGTCGATGCCCCTGCGCCGACGGGCGGCGGGAGAATGCCCCTGCGCCGGCGGCCGGCAGGATCGAAGCGCTCCGGCATCGTCGGGAATGAGCCTGGCGGACGGTCGCTGGCGGCT

Explanation	CPC Score
noncoding	-1.04639

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0315800.1	5	24002306	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0315800.1	osa-miR5794	Translation	5.0	21.518	1	21
Osa05LNT0315800.1	osa-miR5816	Cleavage	5.0	23.081	1	24
Osa05LNT0315800.1	osa-miR5827	Cleavage	4.5	8.126	1	21
Osa05LNT0315800.1	osa-miR5827	Translation	5.0	14.428	1	21
Osa05LNT0315800.1	osa-miR166l-5p	Translation	5.0	9.938	1	21
Osa05LNT0315800.1	osa-miR166l-5p	Translation	5.0	12.146	1	21
Osa05LNT0315800.1	osa-miR169i-5p.2	Cleavage	4.0	12.959	1	22
Osa05LNT0315800.1	osa-miR1429-3p	Cleavage	5.0	11.367	1	21
Osa05LNT0315800.1	osa-miR1429-3p	Cleavage	5.0	12.865	1	21
Osa05LNT0315800.1	osa-miR2871a-3p	Cleavage	4.5	11.44	1	21
Osa05LNT0315800.1	osa-miR2871b	Cleavage	4.5	11.44	1	21
Osa05LNT0315800.1	osa-miR1862f	Translation	4.0	14.634	1	20
Osa05LNT0315800.1	osa-miR1862g	Translation	4.0	14.634	1	20
Osa05LNT0315800.1	osa-miR2275c	Translation	5.0	8.473	1	23

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0315800.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0315800.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0315800.1	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0315800.1	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474
Osa05LNT0315800.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0315800.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0315800.1	5	APAGE1	Physiological trait	Eating quality	nan	nan
Osa05LNT0315800.1	5	nan	Resistance or Tolerance	Drought tolerance	C43	RZ70
Osa05LNT0315800.1	5	nan	Resistance or Tolerance	Drought tolerance	C43	RZ70
Osa05LNT0315800.1	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346
Osa05LNT0315800.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0315800.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus