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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0316000.1

TGCTTCTAGAGGCTCATACCACATATGTAAATATCATTTCATTCATTTTCATCTAGCAAAAAAACACCCAATGCACCTCTTTCCTGTGCATACAAAAACTCGGCACACCGAAAGAAGGCAAGAATCACAATAAAAGAACACAAAGAAACCCTATTTTTACATGTGTATGAACACCATCTCTACATCGCAAAGACTCCAAGAATACAGTTACCGCAGAATAGATCAACTGTATACATACTCATCCGATTGTATGATCCTAATAAGCTCTTGCAGATTATCAAATACGCGCCTTCCAGAGCTCTCAGCTCCAATGTAGTTCAAAAGCTGCTCTGTATCCTTGTGCAACAAGTAGATTGCATAGGATGCCTTAGTGGGGTCATCTTCTTGACATTCCACGAAAAGGGGGTAAACTGTCAGTTTTGGGTCGGTCATGTTGATACATGTACGCTCTGCTGAAGCAATGGATGCTGTTTCAGCTGAAGGCAAACAATCACTCACATAAGATCGCGATCCTCCAAAGTGCAAAGGGTATCGGAGGGGAACATGAAGATAGGAGGCTATGAGCAAAATTGCATGCGCTGCATATCCCAGAACAGCTGCGGACCGCTGAAGATCCTTCTCACATATATCATTTTGTTTTCTTCTTTGCTTACCAATTTGCCAACCCAAAAATGTCAAAGCATGTATTTGTGGTAGTTTGATAACATTGAGTAGATGTGTTCCATTCTCTTCTGGAAGTGTTCCATTTTCTTCCGAAAGAGACCTATGTGCTCCATTAGTATTGGAATTGAGGTTTCGCCCATGCGGCAGATCATGGAATACCTTCACAGGGTACAATGCAGCAACCTGGCCAATCATACTCTGCTGCCTCATCCTTAACAGCCTCTGCAAATCCCCAAGCCGCGCCTTCTCTCCAGACAACGCTTCTTTCGCATCCTGCAGCCGCCGGCTCGCGGCGGCGACGGCGCCGGAGAGGCGCAGCACGCGGTCGATCTGCGCCTGGAGCTGCTCCCTGCGGCGGTCGACGCCCCGGGCCGCGTCCCTCCTGGCGACCAGCAAC

Coding Potentia
Explanation CPC Score
noncoding -1.11669
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0316000.1 5 24108948 A G
Osa05LNT0316000.1 5 24108923 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0316000.1 osa-miR5516b Cleavage 4.5 23.83 1 21
Osa05LNT0316000.1 osa-miR7695-3p Cleavage 5.0 23.119 1 21
Osa05LNT0316000.1 osa-miR1862f Cleavage 4.0 12.852 1 20
Osa05LNT0316000.1 osa-miR1862g Cleavage 4.0 12.852 1 20
Osa05LNT0316000.1 osa-miR5516a Cleavage 4.5 23.83 1 21
Osa05LNT0316000.1 osa-miR2275d Cleavage 4.5 18.941 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0316000.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0316000.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0316000.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0316000.1 5 qRFC-5 Physiological trait Eating quality RG470 RG474
Osa05LNT0316000.1 5 qRGR-5 Physiological trait Germination/dormancy RM421 RM480
Osa05LNT0316000.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0316000.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0316000.1 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0316000.1 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0316000.1 5 APAGE1 Physiological trait Eating quality nan nan
Osa05LNT0316000.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0316000.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0316000.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus