\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0316900.1

GCTCGTATTAATATCTTGTGGGCGATTCTAAACAGAATCGATAGATCGATCTGCATGTTATATCGCGATCAGAGGATTCGGAGGCAATACGGCGGTGCGACCCATCGGCGATTCTGAGGCGCCGACGTCTTCCATTACTGGTGCTTTCGGTATGGTTGTCCCCAGGCGATTGGCTGGCCGAAGCGCTGGTGACAAAACAATGGCGCCGTTGATCTTCGGGCATTGGCAAGCCAGTGTGGCCGTGCGGCGACGGCATCGATCCAGGCCCGTGCAACGATAAGATGATGATGAGAGCCGTCCAGAACTGGAACATCGAGTCATCGACGATCGATGCTGATGCGAGATGCATGTATCGTAGACAGATGATGCTGACCACGTCATCGGCGTCGGCATCGAACCGGCCGTGATTCCTAGCTGACGGTGTTGATTAAGGAAGACACATTCTTGGCCCCCTCTCCGGCGCGCCATCGGCGTGATCCCGTCGAAGCTAACCGATCTGTCAGTAGGGATATATGCAGAGACTCATCGATGAGACACATCGAGGGTGATCCCATTATGTTTTGTTTTTAGTCTCCATGCATTTCCGAAAGTCTTGCATTGTTTTTTTATTCATTGTTCCGTCCATTCAAAATTCAGTTCCCTTCTAGGGTATTTCATTAATTTGGGTTTCTTCATAATGCAACGACCCGATACTTTACCAGTGATTCAGTTTGTGAATCGTTGGTACGGTGAC

Coding Potentia
Explanation CPC Score
noncoding -1.36156
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0316900.1 5 24756661 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0316900.1 osa-miR162b Translation 4.5 19.42 1 21
Osa05LNT0316900.1 osa-miR393b-3p Translation 5.0 12.668 1 21
Osa05LNT0316900.1 osa-miR2876-3p Translation 5.0 21.311 1 21
Osa05LNT0316900.1 osa-miR3980a-5p Translation 4.5 21.874 1 21
Osa05LNT0316900.1 osa-miR3980b-5p Translation 4.5 21.874 1 21
Osa05LNT0316900.1 osa-miR5072 Translation 5.0 21.653 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0316900.1 5 qRFC-5 Physiological trait Eating quality RG470 RG474
Osa05LNT0316900.1 5 qRGR-5 Physiological trait Germination/dormancy RM421 RM480
Osa05LNT0316900.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0316900.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0316900.1 5 APAGE1 Physiological trait Eating quality nan nan
Osa05LNT0316900.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0316900.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
Osa05LNT0316900.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0316900.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0316900.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0316900.1 5 nan Physiological trait Eating quality RM163 RM31
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus