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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0317100.1

GTCCAGCATGCTCAATATTGTTGTGGAATTCATTACAAAGGCAAAAACTAGAGGATGGTTATATGGTACTCAACTAATATACCACTCAATCTAACAGCAAGGTGACTTCCCCATGGTTAACGCAAGAGTTGGAGCAGTTACCCCACAGAACCCTTTAATCTGACCTGGCCAATTGTCAACAAAAAATGAATAGCCTTCAGCTTTCTTCACTCAACGTTTATCTTTTGCTTCTTCGTGTGCTCCTTGTTTTTCTTGGCCTCACGGCGCTCCCTCTTGAGCCCCTTGATGTCGTTTGATAAAGACATCTTTGCAATCTGCTGGTCTGGAATGTAGACCTTGCCCAACTTGCCCTGCACAGGATCCTTCGTGACATTTTTCATCTTCTTAGCATGATCGGCAGTCTTCATTGCTTCCTTCTTCAAACTTTCAGCTGGATATCGGTGCCGCCTAACTACTAGGTCCATCGAAGGTCCAACTTCAACCAGCTCCATTCTAGGAATAGATGTGCCAGACCGTTTCAGACGGAGAGCACAGTGCATCAAGTAGACAGTGGTAGGGGATATTGCTGTGCACACAAATACCCGATCTACACCGGCAAGATTCAGATTCTCTACCACCTCTCCTCTGAAAAGATCAAGCAGCACTTCCTTCAAATGCTTCAGCTCTTCAACACTTTCAAAATGCTCCCCAATGAAGGTAAAGAAAGGCTTTGAGCCAAGCTTAGGTGCCAGTTTCTTATCATAGACATATGATTCAATTTATTTGTAGTTCTCAACTCCTACTTCAACAAGGTCATATATATGGTGATCATAAGTCCTTCCCAAAACAAGATTGTTGGGCCTCTTCTTTGAGTGAGAACCATATACAATTAGGCTGCAATCCGTCTTGAGTGAGAAGAACTCAAGCGAAGTTTCGCCGCCGCTCTCGAACGGCCTGATGTTCTCATTCTTCTTGGAGTACCTGACGGCATTATCACGCTTCAGGTGGAACAAATCTGCGAGCACGGAGTTCAGCACCGCGCTGGTCTTGGTCCCATGGAGAACAAGCGTCTTCTTGCCGGTCTCAACGAGCTTGGGCGCGTGCTTGAGGAGCTCCCTCTTGGCGCGGTGGCTCTTGGGCGCCCTGATCGCCACCATCTTCTTCTTCTTCTTCTCCGGCTCCGGTCGATCGATGCCGCCGCGACGGGGAGGTGGAGTCGGCGGCGAGCGGCGGCGCGGT

Coding Potentia
Explanation CPC Score
noncoding -1.08669
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0317100.1 osa-miR395b Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395d Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395e Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395g Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395h Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395i Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395j Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395k Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395l Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395s Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395c Cleavage 3.5 11.521 1 21
Osa05LNT0317100.1 osa-miR395u Cleavage 3.5 11.521 1 21
Osa05LNT0317100.1 osa-miR395m Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395n Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395o Cleavage 3.5 11.521 1 21
Osa05LNT0317100.1 osa-miR395p Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395q Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395v Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR395r Cleavage 4.0 11.521 1 21
Osa05LNT0317100.1 osa-miR815a Cleavage 4.5 24.269 1 21
Osa05LNT0317100.1 osa-miR815a Translation 5.0 24.446 1 21
Osa05LNT0317100.1 osa-miR815b Cleavage 4.5 24.269 1 21
Osa05LNT0317100.1 osa-miR815b Translation 5.0 24.446 1 21
Osa05LNT0317100.1 osa-miR815c Cleavage 4.5 24.269 1 21
Osa05LNT0317100.1 osa-miR815c Translation 5.0 24.446 1 21
Osa05LNT0317100.1 osa-miR395y Cleavage 4.0 11.521 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0317100.1 5 qRGR-5 Physiological trait Germination/dormancy RM421 RM480
Osa05LNT0317100.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0317100.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0317100.1 5 APAGE1 Physiological trait Eating quality nan nan
Osa05LNT0317100.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0317100.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0317100.1 5 qRFC-5 Physiological trait Eating quality RG470 RG474
Osa05LNT0317100.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
Osa05LNT0317100.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0317100.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0317100.1 5 nan Physiological trait Eating quality RM163 RM31
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus