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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0028600.1

GAGAGGAGAAGGAGAGGAATAGATAAGGTTGAGGAGAGAGTTAAAAGGAGAGGAGGAGATAAGGTTGAGGAGAGGAGGAGGGAGGAGTTAAAAGGAGAGGAGGAGATATCGTGCAGGCCTCTCCGATCTCCGCGTCGATCTTTTTCCCGGTTGGTGTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTAATACCAACCGGGAGTAAAGTGTATAGCGATCTTTTTTCCCGGTTGGTGTTACCAACCGGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGGAAAGTACCCCTAGAGCTTTAAAACCGGGACTAAAGATATTTTTAGTCGCGGTTTTTAATATAACCGGGACTATTGTGAAATCTGGTCGACCGACCAAAGATGGTTTCTCCACCAGTGTCGTCTAACAACTGAGGGATGGAAGCCCTGTTCACTCTTCTCCTCTTGTATGTTTTGAGCATTTCTTGGTCTGCTGGATTGATGTTTCTGCTTATGCTCAGCATGGTGTTCTTACGTGTCGTGAATGTCTTCTTTCTTGGGCTGATGTTGCTGTCGTCCAGCATCATACTCTTTGCGGTATTCAAGTCCATGGCGTAATAAGCACTAGCAACAGCAAATATACCTCGTTAACAGAAATATGGGTGGAATACCGTATACTCAGGGCAGGGGGTGCTGTCTATGCTAGCAATGACTGGATTAGATGCCTTGTAGCATGCATGGAGTCTTATAACTAGTTATAAACACACCCAGCATAAGAACATCCGGTTATGTATACCGAAACGGATTCTACTCCGTGTTCGGCCCGGATCAGGCGACGAGCGATTAAACGTGACGGGTTATGAGGCATGAATAAAATAGGCCAAGATTTTTTTTAGAGGGCAAAAGCTTTGCCTCGTATATTAATAGAGATGGAGAAAAAAAAACAACTAGTAGTAGTATATTAATAGAGATAGAGAAAAAAAAAACAGATCACAGGGGAAGCCTCAAAAGCTAAACCCATGGGAACCCGTCAAAGAGGTTAAGTAATATCTCCTAAATAAGAGGTTAAGTGATATCTTCCAAAATAGGCCAAGTAAAGCGAAAGAAAGTTTGTCACCTTGGGAGCACTCGAAGTTACCCCGGTGCGACGTGGCGGCGGCCCTGCGCCGAAGTTAAGGAAGAAGAAGGACGGCGGCAGGGGAGTTAGGGGGTGGAGTAGAGTTGGCGGTGGGTAAGCCCTGCAGGCCTCGGTGAAGCAGGGGCAACGGTGATGGATCGGTGGAGGGAGCGGCGCGTCTCCTGCGACAACTGGAGTTGGGGGAGCGAGAGGCGGATCTGGGAGAAGAGGGGATTT

Coding Potentia
Explanation CPC Score
noncoding -1.10066
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0028600.1 1 25548019 T G
Osa01LNT0028600.1 1 25548141 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0028600.1 osa-miR5544 Cleavage 3.0 22.291 1 22
Osa01LNT0028600.1 osa-miR1425-5p Translation 4.5 19.017 1 21
Osa01LNT0028600.1 osa-miR2100-5p Translation 4.0 17.157 1 22
Osa01LNT0028600.1 osa-miR2120 Cleavage 1.5 24.45 1 24
Osa01LNT0028600.1 osa-miR5490 Cleavage 4.5 11.483 1 21
Osa01LNT0028600.1 osa-miR5523 Translation 4.0 20.931 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0028600.1 1 nan Resistance or Tolerance Drought tolerance RM129 RM5
Osa01LNT0028600.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0028600.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0028600.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0028600.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0028600.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0028600.1 1 nan Morphological trait Seed CDO118 CDO455
Osa01LNT0028600.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0028600.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus