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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0028700.1

CATAATTTCTGGTTGTAATATCACTGGTGTTGCACAAAACTAGATACAGCAAGACTGGCAAAAAGTAGAATGACAGAAGAATATGTGATACTGGCAACTGTTCTAATACACAATCTTCAATGTGAAGCTCAGCAGGATGTTTTGAAAAACTGCCAGAACCGAAAGCTACTCATCTTGAGAAACTAATGAGATCCTTTCTTCCTTTGTAGTTCTCAATACTTTCAGGGCTTACTAGTCCTGTACTTTCCTCATATTTCTTCTCTAGGTCCTTCAGTCCCTCACGCACGCTCTCAAGAACATCAAGAGACATCCTGTCAAAGAAAAGAATCCCCTGTAAATGATCAAATTCATGTTGGAAAACTCTTGCAGACAGACCTGACAATTTAACTTTAATCTTTGCCCCTGTAACATCCTGAGCATCAATTTTGACATTGTCTGGTCTCACCACATTGGCATATATCCCAGGGAATGATAAGCAGCTTTCCTCATACACTAACAATCTCTTCGACATTTTGTATACAACCGGGTTGACAAGGACAATCTCCTCTCCTTCTCCCTTCACACCAGCTGGATTAAATACCATAAGTTGTACATTCACCCCAACTTGTGGTGCAGAGAGACCAATTCCATCAGTCTTGTACATAACGTCGAACATCTCGTCAGTGAGGCTGCGGAGGTTGTCATCGAAGGTATTGATGCGCTTGTTGCGAGCCCGTAGGATTGGGTCGGGGTACTTCACGACCTTGAGCGGCGGCTCGAACTGGAGGTCAGCAGCTGTGGCGAAGTCCTCGTCCTCGGCCGGCGGCGCGGTGACGACGGCGGAACCGAAGCCGTGGCGGAGAGGCGCGACCGAGCCCGTGCGGGAGAGTGGCAGACCCGCGGAGGCGGGGGCCGAGGCTGAAGTGAAGGCGAGCGGCCATGGTGGTGGAGGACTGGGCGAGTCGCCGATTTTTTTCCCTCTCCCCGCACGCGGCAGCGCGCCAGCGCGAGAC

Coding Potentia
Explanation CPC Score
noncoding -1.2605
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0028700.1 1 25520905 A G
Osa01LNT0028700.1 1 25520699 A G
Osa01LNT0028700.1 1 25522447 A C
Osa01LNT0028700.1 1 25522737 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0028700.1 osa-miR2866 Translation 4.0 15.183 1 20
Osa01LNT0028700.1 osa-miR5493 Cleavage 5.0 24.454 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0028700.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0028700.1 1 nan Morphological trait Seed CDO118 CDO455
Osa01LNT0028700.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0028700.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0028700.1 1 nan Resistance or Tolerance Drought tolerance RM129 RM5
Osa01LNT0028700.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0028700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0028700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0028700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus