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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0317600.1

ATGCCCTCCTTCTTATTCCACAACTGTGATTTTAACAGGGAAGCAGCCTCAACTTCTTCAATTTTCTTGTTTGATTGCACTAAAAGAGACTCAACCTCCTTAATTTTGGTAGTTAAATGTTCTTCCATTTGCTTTGCGGTCAGTTCGATTTTCTGAAGTTGTTGCTCATGCATGCTAGTCATGACTTCCATCTCTTTCTTAAGACTAGCTATTGTGTTTTCAGAAATTTCTTTTTCTTTCATTAGCCGAGCAACATCTTGCTCACCAAGTTTCCTTTTCTCTTCTATTTTTGACTTCTCTTCCTTAATTATCTGAAGCCGGTTTATAGCCATCTGGTTTTCTTCATTTGTCCCATTTACTAATATTTCAAGTGCTTTGATTTTTGAATGGTATTTATCTTCCCTTGTCTTAATGATCACATTTTGACTTCTTATGTGCTCTGCTTGAATACAAAGACGACGCTCAATTTCTTGAACTACTTTCCTCAGTAGGTACACTACACGATGTGGTATTTCTCCCTTTTTCCTTTCAATGCTTTCGTCCAAAATGCCATTAACGACGCTAAGAAGGGATTGGGTTGGTGCATTATCTAAACTGTTAGAATGCATCATTTCTGAAATCTTGGCAGCCGGAAGATCAGCATAGGATCCACGTTTTAATTGGAAAATCTCACGAAGCTTTCGTCCATTAAAGATGGGAGTTTTCTGCTGAGACTTAGGGTCTGGAAGGCCATTCCTCTTGTCCTCTCCAGGGGATGTCTTCCCTTGTGCCACACCAGGGACAAGAGGTTCACCAGTTTCTGGAACTCGCCATTTTTTCCTCAAAGGAGCCTTGGAAGTACCATCACGTAATCCAGAACTCACACTTTCCCTCAGAACCAAGAGGCAGTCCACTACCCCAGACATTGAACCCTCCTCAAGATCTTTAACACTGAAGCCTGGCAACCCCATATCAGCAACCACTGCGAGGAACTTCTTCACATGGCCTGCATGTTGATCTGACGATGCATAAGCACCCCACGACTCCTCGAGAACACCAGGAATGAGTGCGTTCACGATATGGCACAAGACCGTGCCATCACTGAGCAGCTCCCGCAACTCGTCATCCGATGAGTCCAGTGGCAAACAGTACTCCGGGAGTAACGCATTGAGCCATTCAATCACTTCCGCACGCCGATCCGCTGCCTGGAGCCCCTCGAAATCTCCGTCCACGCTCCCCATTCCTCGCCGCCCGGGCCGGCGCACGGCGGCCTCGGCTCAGATCGAGGCCGCCGCCGGCGAGATTGGGCGGATTCGAGCTCGGGCGGCGCCGCCTCGGGGCAATGCGGGGGCTGGTTTTGTTGCTCCGCCACGCGTCTCGTCGCCGTCGTGCGCGGTGCGCCGCCCCCCGGCCGTGCTTTGTGTTGTCCTCTGTGTTTCGCTTTTGGTTTTGGTTTGGTTTGGTTTGTCCTCT

Coding Potentia
Explanation CPC Score
noncoding -1.17346
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0317600.1 5 25925734 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0317600.1 osa-miR5797 Cleavage 4.0 18.918 1 21
Osa05LNT0317600.1 osa-miR5819 Cleavage 4.0 24.477 1 21
Osa05LNT0317600.1 osa-miR5837.1 Translation 4.5 15.48 1 21
Osa05LNT0317600.1 osa-miR171h Cleavage 4.5 9.156 1 21
Osa05LNT0317600.1 osa-miR815a Cleavage 3.5 15.812 1 21
Osa05LNT0317600.1 osa-miR815b Cleavage 3.5 15.812 1 21
Osa05LNT0317600.1 osa-miR815c Cleavage 3.5 15.812 1 21
Osa05LNT0317600.1 osa-miR1851 Cleavage 5.0 15.453 1 21
Osa05LNT0317600.1 osa-miR2922 Cleavage 5.0 10.738 1 20
Osa05LNT0317600.1 osa-miR5148a Cleavage 5.0 16.722 1 24
Osa05LNT0317600.1 osa-miR5148a Translation 4.0 11.845 1 24
Osa05LNT0317600.1 osa-miR5148b Cleavage 5.0 16.722 1 24
Osa05LNT0317600.1 osa-miR5148b Translation 4.0 11.845 1 24
Osa05LNT0317600.1 osa-miR5148c Cleavage 5.0 16.722 1 24
Osa05LNT0317600.1 osa-miR5148c Translation 4.0 11.845 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0317600.1 5 qRGR-5 Physiological trait Germination/dormancy RM421 RM480
Osa05LNT0317600.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0317600.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0317600.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0317600.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
Osa05LNT0317600.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0317600.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0317600.1 5 qRFC-5 Physiological trait Eating quality RG470 RG474
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus