>Osa05LNT0318100.1

CGCAACCGTATAGAGGCTGGGTGGCGCCGGGTCTCGCGTAAGCCGCTACCGCCTATAAAAGGCACAGCTCGTCAGCCATAAAGGGGGAGGCAGAGATGGAGAACCACAACGGAGAAGAAGCAAATCAATCTAACACAAGATAATACAGAGGCCGGGGCGGAAGCGCACGCCAACGACCAACGTGTGCGTCGCCGGCCGGTGGCAGCCAGCGGGCGCTCTGTGTCGGGCGCCGGTCGACGCTGGAAGATCAATCTACCCGGAGACGAAGGCTGCGACAAGATCGACGCCGCGCCGTCCAGGACGATCCCATCTAACATTGTCCAGTTCTTCTCATGTTTATCTCTCTCCCTCTATCTGGGGAAACTGTTTTAATCACTCGAGGGGATATCCCCTCGTTCTTTGTATATCACTTAAATGGTTATGAAAAAAATTGAAAAAAATTAGGAAGGTATATGTAATATAACACTCCACAAACATGCAAGTTCAAATTCAACTTCTACATCTCGTAACGAAAAAAACAATCGTAACGAAAAAAACAAATTGAACCGCAGCTAGTTAACGTATATTCAGAGTCAAATTTGTTTTTTTCGTTGCGAGATGTAGAAGTTGAATTTTTACTTGCATGTTTGTGGAGTGATATATCACATAT

Explanation	CPC Score
noncoding (weak)	-0.495355

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0318100.1	5	26396146	T	C
Osa05LNT0318100.1	5	26396168	T	C
Osa05LNT0318100.1	5	26396516	T	C
Osa05LNT0318100.1	5	26396669	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0318100.1	osa-miR3979-5p	Cleavage	4.5	15.657	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0318100.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0318100.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0318100.1	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346
Osa05LNT0318100.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0318100.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0318100.1	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0318100.1	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474
Osa05LNT0318100.1	5	qGT5-1	Physiological trait	Eating quality	RM538	RM480
Osa05LNT0318100.1	5	qRGR-5	Physiological trait	Germination/dormancy	RM421	RM480

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus