>Osa05LNT0318600.2

CCTTCATCATCATCCATGAGATTATAGTTCCATGAAACTTCAAAGATGACTACAAGTGTACAACTCTCTGATTTCACTGTAAAAACTGTCTATAATTTACTGAAAGTGCGCGTTGCGTAACTGAAAAAAGATGCATATTCTGGTCGAATTTCAACAAAATGGCCTTCAGATCGATCAGCAGACCAAGCCCTTGAAGCAGTAGACGCCGAGGACGAACCAGCCGAGGAGGAGGGAGGAGAATGCCGCCATGCTGATGAGGAAGGACCAGCCGGCCATGAGGACGCCGACGCAGGCCACGGCGGCGAAGGGGAGGAGCGACCGGACGACGGCCATCTTGCCCAGCCACCGGCCGCGCAGCCACACGAGGGCGGCCAGGTTGAGGACGTTCCAGCCGACGGAGCCGCCGTAGGCGAGGCGGTTCAGGCAGCTCGCCACGAAGGAGTGGCTGTTGCAGGTGAAGAGGTTGTAGCACTTGTGCTCGAACCGCCTCGCGCCGGACTGCAGCGCGTCGTCCCACGAGATCGCCGTCCCGGCCTCCGAGTGCTCGTAGGACCTCGCGCACACATGCGCCGCGAGGTTGGCAGGGAAGCAGCACTTTCTCCTGTCGAGCTGGAGGTACCTCGCAGCAGAACCATATGCAAGGTCATCTACACTCACAAAATTTGAACCTGCAAAGTCCATGACAGTTCCATCCTCCCGGGCAATCCCGACATGACCTATGTAGGGAGCCAGCCAAGAAACCACTGGCAGAGGTGTCCAAACAATGCAACAAGGGAACCTGGTTCCCTTTTGGTCTACTTCACCTAGTGGCCACAATTCCTGCATCTCATTGCTTGAACTGACTACTCCATCACCACAAGCAGCTTCAACCTCCATTGAAGGCAATAATCTCAGAAACTCGGACAATCCTCGTACTATCAAACATAATCAAGCATTTTCCAGTTGCATGTCATGATCCTGTCAACCTACAATAAAACACTCTTCGTCAACACCACACCAGAGCCCTCCCTCCCAGCTCAACCTCGCTTCCTCAGCAAGCAAAACATCCAGCCACCAATGCACTAGACGAAACACCCCGATGGCCTTAATCCCATTCGGACTCGTCCAAGAGCAGCGGGATCCTCCTGAGAAGTCGCATTGGGAATGGATTGGATTGGGACGCCACCGCTCCGAGCAAGTGCAGGTCAAGTGTTTGAC

Explanation	CPC Score
noncoding (weak)	-0.506898

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0318600.2	5	26816106	A	G
Osa05LNT0318600.2	5	26816445	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0318600.2	osa-miR160a-5p	Cleavage	4.0	23.63	1	21
Osa05LNT0318600.2	osa-miR160b-5p	Cleavage	4.0	23.63	1	21
Osa05LNT0318600.2	osa-miR160c-5p	Cleavage	4.0	23.63	1	21
Osa05LNT0318600.2	osa-miR160d-5p	Cleavage	4.0	23.63	1	21
Osa05LNT0318600.2	osa-miR160e-5p	Cleavage	4.0	23.63	1	21
Osa05LNT0318600.2	osa-miR160f-5p	Cleavage	4.5	23.63	1	21
Osa05LNT0318600.2	osa-miR166k-5p	Translation	4.5	24.606	1	21
Osa05LNT0318600.2	osa-miR815a	Cleavage	4.5	21.483	1	21
Osa05LNT0318600.2	osa-miR815b	Cleavage	4.5	21.483	1	21
Osa05LNT0318600.2	osa-miR815c	Cleavage	4.5	21.483	1	21
Osa05LNT0318600.2	osa-miR1882a	Translation	5.0	14.817	1	24
Osa05LNT0318600.2	osa-miR1882b	Translation	5.0	14.817	1	24
Osa05LNT0318600.2	osa-miR1882c	Translation	5.0	14.817	1	24
Osa05LNT0318600.2	osa-miR1882d	Translation	5.0	14.817	1	24
Osa05LNT0318600.2	osa-miR1882e-5p	Translation	5.0	14.817	1	24
Osa05LNT0318600.2	osa-miR1882f	Translation	5.0	14.817	1	24
Osa05LNT0318600.2	osa-miR1882g	Translation	5.0	14.817	1	24
Osa05LNT0318600.2	osa-miR1882h	Translation	5.0	14.817	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0318600.2	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474
Osa05LNT0318600.2	5	qGT5-1	Physiological trait	Eating quality	RM538	RM480
Osa05LNT0318600.2	5	qRGR-5	Physiological trait	Germination/dormancy	RM421	RM480
Osa05LNT0318600.2	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0318600.2	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0318600.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0318600.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0318600.2	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0318600.2	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus