© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa05LNT0319100.1
GCTTTGCCTCGCTCTGCACGCACGGCCACCCATCGTCGTCTCCAGTCTCCACCCCTCTTCTTCCTCCATTGGTGGTGTACGCTTGCCTCCGTCTCAGCTTCGTTTTCAGATGTCTCCTCGTCGTCGAAGCCGGGAGAAATTAACCGTGCGTGTTTGCCATGATCGATTGTTTTGTCCAGCAATTTGAGCGAACAGTAAAGAATTACTGAGCCATGTCAGAGTGTGTTCTGAACTTCTTGTTGGAAGAGCAGCGAGGCGCTGTGGATGAGGATCGATTTTAATGATGAATCCATTATTATTGGCTTCGATTAATCCACTCGAGTGTGGAAGTTAATGATGTCCTCTTAATCTGTGACACACGTCACCTGGAACAGCCTTTCCACATTCAAATTTGGGACAATTTGCAACTTCAGAGTTCAGACTTCATGCCATGGAGGAGAAACGTCCAGAGGTATTCCGGCTAGTTTTATAAGGTCATGAGATAATTATATAGAATCCGGCAGCAGTTTTTCGAGTTGAAAAATTGAACTAGAAATTCCTGGAGAGGCCACATTTTACGTGAGAGTGAGACACGGCGGCGGCGGCAAACCCCGGCAGGCCGGCAAAGCGGCAGCGGCGGCGAGGTCACCTACACCGTCCGATCGGATACGCGCGGTTCAGATTGGGAACAGTTGAGATTTTAGAGGGAACCAGGTTTATTATTGATGGGAATAATCACATTTCATGCTGATACAAAAGAATGGCGACAGCATAAGGCCGTGATACGGTAACAACATTTACACTCATACGGGTACATCAGTTTGTGCATTTCTGCCCTGGGACGCTTCTGTCCAAGGCGCGCACCAAATACCTCATCAATTTTCTTCCGTATTGTTCACTTATTCTGCTTAGAGCAGAAGTTTTCTCAGGAAGTCTTCGGAGATGCTATTCTAAAACCATCATCTCCACAGTACTGAGGAGACATGAAAATACCAGGTCTCCTCGACGGCTCTGAGAGTAATTTACATGAGTTTTGTTTCTGCAGATTAAAGCAACATAGCTCGGTTAAGTGTTTGCTACAATTTCAGAAACACTCTGGATGGTATTTTGATGTAGTTCTTGAAACCTACCTTATGATTCGATTGCTGCGACCCTTACTGGCTTCATTACTTTTACAATGTTCCTCATATGCTCAAACCCCATCAGTATCACTCCTATGACATAAAGAAAGCTTAGTTGCAGCTTGGCAAGTAAGTTATAGACTGCTATTGCGGCATTTCCCCCATCATCTGTTCGTATTGTGACGGAAACAGGTCTTGCAGAAATAAGAGCCCCGGTTTCTGATAAAGACGTAGCGTAAGAAGTGTGCCTTGGAACATAGCCTTCGAAAGAGATTTCGGGGGTGTTTGGCCTTTCTAAGCTCACCTGATGAATTCTCTGGCTGGGATGACCATTCCTCAGGTTTCATCATAGATTTTGTGGCTTTTATTAATTCCATTAGTGCATTGTTGACCTGCAATAGAGAAATACTCAGATGAGTCAACTTACAATTTCCTGCAACTCTGTAAGCGTGATGAAATAATGAGAGAAAAGAACAGCGATTTGGAGAAGGTATAAGCCTTAAAATAACTCTGTAAGTTACATGTTTATGATTCCATCTCAGGTTTGGGATAACCATTTCATTGGTGCCTAAAAAGCAGTTTCAGAGTTGGCCAAACAATTTTCTTCAAAAGTAGCATCTTCCCTTGTACAGTTTAGGTGGTGAATGATGCTTTCAGAGAACGGCCTGCCTTTAGTTCGGTTTGGCAACTTTGGAAGAATTTGTGCAAGTTGCAACAGCACAAGCATCTAGTAACGTTCTAACTGGTATAAGCAAAAGCATTCTTCCAAGTTTGGGCTCAAAAGTTACATGCCCATTAGTGCATCTATGTTAGAGTTTGATGCTTGCAGGGAACCATGATTTCTAATATTGCCTCGCTCGGTCAGCTATTTAGGAATATTTTCAGCATTCCAGCATAATTTCAGCTGCCTAACAATATAGCATTTTGTCAAAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa05LNT0319100.1 | 5 | 26911730 | A | G |
| Osa05LNT0319100.1 | 5 | 26912359 | T | C |
| Osa05LNT0319100.1 | 5 | 26912176 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa05LNT0319100.1 | DTM_#DNAt_MULE_japo_Os0084 | Chr5 | + | 26912065 | 26912388 | 323 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa05LNT0319100.1 | osa-miR5826 | Translation | 4.5 | 16.758 | 1 | 24 |
| Osa05LNT0319100.1 | osa-miR5827 | Cleavage | 4.0 | 21.752 | 1 | 21 |
| Osa05LNT0319100.1 | osa-miR1429-3p | Translation | 4.5 | 17.718 | 1 | 21 |
| Osa05LNT0319100.1 | osa-miR444b.2 | Cleavage | 5.0 | 17.12 | 1 | 21 |
| Osa05LNT0319100.1 | osa-miR444c.2 | Cleavage | 5.0 | 17.12 | 1 | 21 |
| Osa05LNT0319100.1 | osa-miR2100-5p | Cleavage | 5.0 | 18.232 | 1 | 22 |
| Osa05LNT0319100.1 | osa-miR2275a | Cleavage | 3.5 | 11.278 | 1 | 22 |
| Osa05LNT0319100.1 | osa-miR2275b | Cleavage | 3.5 | 11.278 | 1 | 22 |
| Osa05LNT0319100.1 | osa-miR2929 | Cleavage | 4.0 | 18.304 | 1 | 21 |
| Osa05LNT0319100.1 | osa-miR5073 | Translation | 4.5 | 15.9 | 1 | 23 |
| Osa05LNT0319100.1 | osa-miR5508 | Cleavage | 4.5 | 12.572 | 1 | 21 |
| Osa05LNT0319100.1 | osa-miR2275d | Cleavage | 5.0 | 11.278 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa05LNT0319100.1 | 5 | QFla5 | Morphological trait | Culm/leaf | RG470 | RG346 |
| Osa05LNT0319100.1 | 5 | nan | Morphological trait | Seed | RM163 | RM31 |
| Osa05LNT0319100.1 | 5 | nan | Morphological trait | Seed | RM163 | RM31 |
| Osa05LNT0319100.1 | 5 | nan | Physiological trait | Eating quality | RM163 | RM31 |
| Osa05LNT0319100.1 | 5 | qRFC-5 | Physiological trait | Eating quality | RG470 | RG474 |
| Osa05LNT0319100.1 | 5 | qGT5-1 | Physiological trait | Eating quality | RM538 | RM480 |
| Osa05LNT0319100.1 | 5 | qRGR-5 | Physiological trait | Germination/dormancy | RM421 | RM480 |
| Osa05LNT0319100.1 | 5 | QPl5 | Morphological trait | Panicle/flower | RG13 | RG346 |
| Osa05LNT0319100.1 | 5 | qNBL-5 | Resistance or Tolerance | Blast resistance | RZ649 | RZ225 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)