>Osa05LNT0319100.2

GCTTTGCCTCGCTCTGCACGCACGGCCACCCATCGTCGTCTCCAGTCTCCACCCCTCTTCTTCCTCCATTGGTGGTGTACGCTTGCCTCCGTCTCAGCTTCGTTTTCAGATGTCTCCTCGTCGTCGAAGCCGGGAGAAATTAACCGTGCGTGTTTGCCATGATCGATTGTTTTGTCCAGCAATTTGAGCGAACAGTAAAGAATTACTGAGCCATGTCAGAGTGTGTTCTGAACTTCTTGTTGGAAGAGCAGCGAGGCGCTGTGGATGAGGATCGATTTTAATGATGAATCCATTATTATTGGCTTCGATTAATCCACTCGAGTGTGGAAGTTAATGATGTCCTCTTAATCTGTGACACACGTCACCTGGAACAGCCTTTCCACATTCAAATTTGGGACAATTTGCAACTTCAGAGTTCAGACTTCATGCCATGGAGGAGAAACGTCCAGAGGTCATGAGATAATTATATAGAATCCGGCAGCAGTTTTTCGAGTTGAAAAATTGAACTAGAAATTCCTGGAGAGGCCACATTTTACGTGAGAGTGAGACACGGCGGCGGCGGCAAACCCCGGCAGGCCGGCAAAGCGGCAGCGGCGGCGAGGTCACCTACACCGTCCGATCGGATACGCGCGGTTCAGATTGGGAACAGTTGAGATTTTAGAGGGAACCAGGTTTATTATTGATGGGAATAATCACATTTCATGCTGATACAAAAGAATGGCGACAGCATAAGGCCGTGATACGGTAACAACATTTACACTCATACGGGTACATCAGTTTGTGCATTTCTGCCCTGGGACGCTTCTGTCCAAGGCGCGCACCAAATACCTCATCAATTTTCTTCCGTATTGTTCACTTATTCTGCTTAGAGCAGAAGTTTTCTCAGGAAGTCTTCGGAGATGCTATTCTAAAACCATCATCTCCACAGTACTGAGGAGACATGAAAATACCAGGTCTCCTCGACGGCTCTGAGAGTAATTTACATGAGTTTTGTTTCTGCAGATTAAAGCAACATAGCTCGGTTAAGTGTTTGCTACAATTTCAGAAACACTCTGGATGGTATTTTGATGTAGTTCTTGAAACCTACCTTATGATTCGATTGCTGCGACCCTTACTGGCTTCATTACTTTTACAATGTTCCTCATATGCTCAAACCCCATCAGTATCACTCCTATGACATAAAGAAAGCTTAGTTGCAGCTTGGCAAGTAAGTTATAGACTGCTATTGCGGCATTTCCCCCATCATCTGTTCGTATTGTGACGGAAACAGGTCTTGCAGAAATAAGAGCCCCGGTTTCTGATAAAGACGTAGCGTAAGAAGTGTGCCTTGGAACATAGCCTTCGAAAGAGATTTCGGGGGTGTTTGGCCTTTCTAAGCTCACCTGATGAATTCTCTGGCTGGGATGACCATTCCTCAGGTTTCATCATAGATTTTGTGGCTTTTATTAATTCCATTAGTGCATTGTTGACCTGCAATAGAGAAATACTCAGATGAGTCAACTTACAATTTCCTGCAACTCTGTAAGCGTGATGAAATAATGAGAGAAAAGAACAGCGATTTGGAGAAGGTATAAGCCTTAAAATAACTCTGTAAGTTACATGTTTATGATTCCATCTCAGGTTTGGGATAACCATTTCATTGGTGCCTAAAAAGCAGTTTCAGAGTTGGCCAAACAATTTTCTTCAAAAGTAGCATCTTCCCTTGTACAGTTTAGGTGGTGAATGATGCTTTCAGAGAACGGCCTGCCTTTAGTTCGGTTTGGCAACTTTGGAAGAATTTGTGCAAGTTGCAACAGCACAAGCATCTAGTAACGTTCTAACTGGTATAAGCAAAAGCATTCTTCCAAGTTTGGGCTCAAAAGTTACATGCCCATTAGTGCATCTATGTTAGAGTTTGATGCTTGCAGGGAACCATGATTTCTAATATTGCCTCGCTCGGTCAGCTATTTAGGAATATTTTCAGCATTCCAGCATAATTTCAGCTGCCTAACAATATAGCATTTTGTCAAAG

Explanation	CPC Score
noncoding	-1.29271

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0319100.2	5	26911730	A	G
Osa05LNT0319100.2	5	26912176	A	G
Osa05LNT0319100.2	5	26912359	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa05LNT0319100.2	DTM_#DNAt_MULE_japo_Os0084	Chr5	+	26912065	26912388	323

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0319100.2	osa-miR5826	Translation	4.5	16.758	1	24
Osa05LNT0319100.2	osa-miR5827	Cleavage	4.0	21.752	1	21
Osa05LNT0319100.2	osa-miR1429-3p	Translation	4.5	17.718	1	21
Osa05LNT0319100.2	osa-miR444b.2	Cleavage	5.0	17.12	1	21
Osa05LNT0319100.2	osa-miR444c.2	Cleavage	5.0	17.12	1	21
Osa05LNT0319100.2	osa-miR2100-5p	Cleavage	5.0	18.232	1	22
Osa05LNT0319100.2	osa-miR2275a	Cleavage	3.5	11.278	1	22
Osa05LNT0319100.2	osa-miR2275b	Cleavage	3.5	11.278	1	22
Osa05LNT0319100.2	osa-miR2929	Cleavage	4.0	18.304	1	21
Osa05LNT0319100.2	osa-miR5073	Translation	4.5	15.9	1	23
Osa05LNT0319100.2	osa-miR5508	Cleavage	4.5	12.572	1	21
Osa05LNT0319100.2	osa-miR2275d	Cleavage	5.0	11.278	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0319100.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0319100.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0319100.2	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0319100.2	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474
Osa05LNT0319100.2	5	qGT5-1	Physiological trait	Eating quality	RM538	RM480
Osa05LNT0319100.2	5	qRGR-5	Physiological trait	Germination/dormancy	RM421	RM480
Osa05LNT0319100.2	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0319100.2	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0319100.2	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus