>Osa05LNT0319300.1

GCTAAAAGTGTGCTTAAATAGAGATAAACAAAAAGTCAATTGACAACTAGAAAATATAGCACAGGATAGATAACTAAGTTTTTTTTTGTCTGTTACAAACTCAGTAGGACGTATAGAAACCCGTGGCGGCTACATGCCCACCCTTAAACAGAGTTCCATCTTTTGGGTGCTTAAGCCTATCGTCACAAGCATAGCAGTGATCGTTGTCGACAGGAGGATTCAGAAGATCTGGGCACCCTACAAATCCAACACCAAGAAGTCCTCCAATTCTGTTGTTTTCTTCCAAAGATACCATGCATGTTGGTACCAATCCATTGCTCTTGGGATCATAACAAACTTCAGCAAAAAAGAACTCTTCTTTTGAATCTGATGAAGATGCTACAAAGTTCACATGCCCATAGGATTCGTTGGTTTGGATAGCGCAACTTTTCAGGGCCTTGATGAACCTGTATTGAATCTTGTTGTTTTCATCCTTGTTGTAGTGCTCCAAAGCAACTTTTGCATAGTTATTAGCCTGACGTCGTGCAGCTGCTGTGCAGTCGATATTCTGCTGTGGTGGACCTGTTTTTTCTGCTGCAGCGATGAAGGAATCCACTTCTTCATTTTTAGCCTGCACCACTTCTTCATCTTCCTTTTCTTTGTCTGATCCATGTGTTGCCCAGCTCTCAGATTGCCGTGTGCTCGTGGTTACCGCAGGTGAAGTCGGCGACGGCCGCATCCTTTTCTGTAGGTGATGACGACGACGACGACGGCTTGTGCATACCGGCCTCACAAGAGAG

Explanation	CPC Score
noncoding (weak)	-0.804273

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0319300.1	5	27038580	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0319300.1	osa-miR5541	Cleavage	5.0	15.128	1	21
Osa05LNT0319300.1	osa-miR390-3p	Cleavage	4.5	13.787	1	20
Osa05LNT0319300.1	osa-miR5522	Translation	4.0	11.379	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0319300.1	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474
Osa05LNT0319300.1	5	qml5-4	Morphological trait	Shoot/Seedling	C246	RM274
Osa05LNT0319300.1	5	qGT5-1	Physiological trait	Eating quality	RM538	RM480
Osa05LNT0319300.1	5	qRGR-5	Physiological trait	Germination/dormancy	RM421	RM480
Osa05LNT0319300.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0319300.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0319300.1	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346
Osa05LNT0319300.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0319300.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0319300.1	5	nan	Physiological trait	Eating quality	RM163	RM31

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus