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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0319500.1

ACGCAACCCAACCGTACCACAAAACTGCTCCAACGACACATTGCAACACTTCTTTTAATAAGTTTTGAGAGTAGCGGGACTGACCGATCATATGTGACTGACCGATCGGCCTACTAATAAACAATGGAATAACGACTGCCTCATAGGGGAGTAATTGCAGATGCAGGTGTGACAACAACAACAAAAGAACAACCGTAACAGCATTCCAGAATGAACAAGTAGTCAACAACATAAAGAAGACGCTAGCTAGCTAATCTTCCAATCGTCGTGGAGCATTCCAAGCCATGCATTCAGTTGACACTTGATACTTGATAGATTCTTCCCCCACATACAGCAGCGTCACCTCTCCTCCAGTCGTCAGCAATTCTCGTCTTTCAAGTCTCTCTCTTCTTTCCGGACCTCAAGCATCAGCATGTTAGCGTGATTAATGGTCAGCCCCTCAGGCAATGCTCCTACGTAGCCAACAAATCCACCGTCCTTTGGATGCCTGATTCCACCCCAGCAATGGGCACAGATATCAACGGAACCATTGTATTTATCGACAATCTTGCACATTGTGACCTCATTTGGTTTTTCTTCCCCCCTTAATTCAGCAAAAAAGGGTGTTGAACAGCCAGCAACAGTGGCTCTAAAGTACACGTGCCAGAAACATTGTTTGTCAGCAAGCCTCAAGATAAACATGTGGCTATCCTTGGCTACTCCCTTGGTTGCTTTATTGGCTGGATTTTCCAAGTTGTAGTAGTGCATTGCTAGACGGGTGCAAACACGTGTCTGGTGACATTGACTTGTATTTTTATGTTCTTGCCAATTCAATGGTCCCGGCAGCTTGCTGCGGTCCCTTGAAATTGCATCCGGTCAGGGGGACCTTTCTTTTCGGGCTTTTGGGACGCCATTCTTGATAGCTCAAAAGGAGATGCCCTTAAAGTTTTCCAGATGTATAGGGTGGCGGGCGAGAATGATTGAGCCGACGGCGCGTGGGAATGGGGTACGGGACGACACGGGAAAGGGTTTAGCCGGCGGCGAAGAAACGCAAAGGCGTGGCCGCGTGAGTGAGGAAGAGAGCC

Coding Potentia
Explanation CPC Score
noncoding -1.10098
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0319500.1 osa-miR5540 Cleavage 4.0 11.005 1 21
Osa05LNT0319500.1 osa-miR166h-5p Cleavage 5.0 19.231 1 21
Osa05LNT0319500.1 osa-miR530-5p Translation 5.0 15.704 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0319500.1 5 nan Physiological trait Eating quality C246 C1447
Osa05LNT0319500.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0319500.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0319500.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0319500.1 5 qGR5-1 Physiological trait Germination/dormancy C246 RM26
Osa05LNT0319500.1 5 qRA5-1 Morphological trait Shoot/Seedling C246 RM26
Osa05LNT0319500.1 5 qRDW5-1 Morphological trait Shoot/Seedling C246 RM26
Osa05LNT0319500.1 5 qRFC-5 Physiological trait Eating quality RG470 RG474
Osa05LNT0319500.1 5 qGT5-1 Physiological trait Eating quality RM538 RM480
Osa05LNT0319500.1 5 qRGR-5 Physiological trait Germination/dormancy RM421 RM480
Osa05LNT0319500.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0319500.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0319500.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus