© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa05LNT0320000.1
GTCACAAACGCCTCAACATATCCATCCCGATCTCGGCCACCAGCTCTTGGAGCAGATCCCGTTCGATCTGGGCACCAATCTCAAACGCCTCGTGCAGGACATCCACGCCGATCTCCACCCCCGAGTGCTGGACGTCGCTCGCGATCAGCTCATCCACCTCCTTCCCGGCCATGCCGCTGCACCTCGCGATCTCCCTGTCCACCTGAGCAGCCAGCCTCTCCTCGGGGCAGATCAGGGGAACCCTCGAGAACGACCTGTATCCTGAGTCGCAGAACTGGGTGAACAGCGAGTCCAAGCACTCCATGACGGAATCGAACGCGAGGCTTCCCAGCGGGCTCCTGCTCTTCTCCCCTTCTGTGGCCTTGACGACGCCGGCGTTGAAGCTGAACCCGTTCTTCTTCTTCTTCTTCTTCTTCGTGGAGCTTGTGGTGGTCACGGTGGTCAGAGCAGACTCGAATGTCTTGACAAGGAACGCCTTGAATGGTGCCTTTGATGTCCGTGGAGGAGTAGTAGAAGTAGACCGGCGAACGTTTGTTAGTAGCAGCTCAACAGTTGCTGCAACCTCTCCAGGGTGTATCAGGTTGCTGCTGTCTTGGCCAAAATTAGTTTCAGAGCACCTGGAGTTTCTTTTGTTAGTTCCATCTTGTTGCATTGTGCAATTCTCCGAGCGGCGTCGGTCTCTGAATCCAGCTTCTGATGCTGCAGTTTTGAGCAGGCTCCCAGAAAAGCACTCATCATCTGCATAATAAGATGGATCGCTAGCATTTGTAGTAACCTCATGCTTTTTATGAGTTTCACGCAATTTACCACTTCTAGGAACCTCTCTGAAGCCAAAAGTCAGACTGTCCAGAAAGTTACACTGCCATAGAAATTCATCACTTGGAGATTCTTCCATTACATTGATAGCACTCGTCTTTCGAAACAATGAAGACATTACTCTGTCGTCCAGAATTTCTCTGTTTCTCAACTCATTTCGATTAAAGCACACTGATTCTGCACTTTCCAGACTTGATATGCCTTGTAAAGCTTCACTCAAGACCAATTCCCTTTCTGAAGAAATATTTTGGCAGTCCCTACGATAGTCTCTCTTAGGACAAGAACCAGTTGGAGATCCCAGAACAACACTATCTGATCCTTTAGTATGACCATTCAGCAAAGCGAGGACAGCCTTTCTCGGTGAATTAGAAGAGATGGAAATGATGCCTGAGTTGTTACCCCTAGAAGCAATGCGTGACTCTACCTTTCTCCGCGAGTCATTCCTTACAGAGTTTGGACTGGTAGACTTTGGCTTCTCACTAACTAACCCTGCACCTTTTGCAATTATCATGTCTTTCTCTGTAGCTTTCAGTGTTGCAGTCTTTGATATCTGTTTATTAGAACAATCACCATGCAGGCCACTGGTTCGGTGACATTTTGTGCTCAAGTTCCTGTTCTCCGCACTACCATGTGGCATGCCGATTTTATCCTTTACTTTTCCTTTGGACCTCAAAGATGCACTGTTGTTCATACCTCTGTTTGAACAGACAAAGTCATTGGCTGTGTTTGCCACATTTTGCTCCTTAGCTCTATGTTTCTGCCTTTGGACCATATGCCCTGTATCTGCTGCTCTATAAGTTTCAGGCAATGCATTCTGCTTCAGATTGTTCTGTTTAAGAGGTCTACAATCAACATTCTCTCGGGATATGTTTTTCGGCTGTATTTTTTGGACACCTTGACTTGAAACAAGGACATCATCTGATGTTCTCTGACCACTGTCCTTAAATCCGTTCCTCTGACCCTTATGGTTTCCTTCAGATTGTGCTTGACATGATATGTTCTGGTTTGGCCTCCTAACAGAAACATTCCTCATAGTATCCTCTTCGGACCACTGATTGGAAGTAGAATTGTGCAGAGAGGTGGCTCCTACATTTTGAGCACCTGACCTTGATGCATCAACATCACACATTTCTCTTGCGAATTGATCGGAGAAATCGTGCATGGCTTCAGCAGCACTCTGCACATCACTGCTGTTGCATCTATACTCGAGGCGCGCTTGCCTCCGAGCCTGATGGTGGTGCCTGGATTGTAAACCGGGTTCCAGGACCTTGACTGCTGCTTCAATCAGCCTAACCTTGTTCCTGCTTGAAACTGATCTTGGACTCTTAATAGGTGAGGCTAACTTGTGTGCTGCATGCTTCCGTGACCACACCGGCTGCGCATCTGCATCGAGCTGATTGCCATTGTCATGCCGGCCATCTCTGATATGCCCTGGCTTTTGTTGCTTCTGATGCGAGTTGTATATGCTTCCATAGGAGCATTCACTCCGGTGACCACCAAGCTCGGAGGCATCCATGGTTTTTACTGCCTTTTGATGGCTGGTGGCTGGCATTGCGCTGAGCCCCATTAGCCTGGCTACCACACCCGGTGTGCACATTTCACTGCTTTTGTTGTCTTGGCCAGGAGGTGGCAAGCGAGTGGTAACTTCATTTGGATAGTATGGAGCATCAAGCAGCAGAGTCCTCATCTTGGCCGCCGGCGTCTTCTCGCCGCCGGCAGGTGGTCTCCCAGGCGAGAACTTCTGTGTGCGCACTGGGGGAAGCAGCTTGGTCTTCTTGGAGGACGAGGAGAAGAGCTTCTTCTTGGCGAGCATCTGGAACAGCGACGCCACGCACGACGTCGCCGGCTTCTGCCGCTCGACGATCGCCAGGCTGTTGCCGCCGCCGCCGCTCGCCGCGGTGGCGGAGCTGCCGCCTTTCATGCCTCCACCGCTCCACACGCACACGCCCACAAGAACAAGAAATTCAAACTCAAAAATCTTTCAAAGCCTCTTCTTGCTTCCCCTCTCTCTATCTCTCTCTCTCTCTCTTGCCGTTTCTTATGAGCGAATAAATGCAACAAATCCTGGAAAACCAGTCGCTTCAACTCTTTCTCCGGATAGGCATTAATTGCCACATCAAATTCTTCATGACTTTGCGACAATGCCTTTGCAGCAACAACAGCTCGAGAAAGAACTATGGCTTATGGCCAAATGCTAGAGAACAAAAAGGAGAAGACTACTGTGGCAGCAGCACTCCAACTCTTGCTCAAGACATGACTAATGCATGCCATTATTCCTCTTCCTACACATAGAACCGGAATGGATCAACACTCATCCTGAATGTTCTTGTATCTACTCCTGTTTGTGAACTCTTCTAAAAAATGAAATGCTATAATAAACCTTGAGAAGAAAATATTTGGGGATGAATCTAGAGCAAGTGGGCGATGACTGGATGAGCCAAATGGTGGAGTTGGAGACTGGGGAGGAGGGGGTCCGGGAGAAAAAGAGAGGGGCTTTTGGGTGGCAATCGGAGAGGAAGAGACATCTCAAGCTGCTTTTGTTTCTTTTTTTTTTATGTGTATGTCATGGGTAGCTGGCTGGCTGGCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa05LNT0320000.1 | 5 | 27383706 | G | T |
| Osa05LNT0320000.1 | 5 | 27384108 | T | C |
| Osa05LNT0320000.1 | 5 | 27384243 | A | G |
| Osa05LNT0320000.1 | 5 | 27384264 | A | G |
| Osa05LNT0320000.1 | 5 | 27385080 | T | G |
| Osa05LNT0320000.1 | 5 | 27385755 | T | C |
| Osa05LNT0320000.1 | 5 | 27386411 | T | A |
| Osa05LNT0320000.1 | 5 | 27387596 | G | C |
| Osa05LNT0320000.1 | 5 | 27384891 | T | C |
| Osa05LNT0320000.1 | 5 | 27386380 | T | A |
| Osa05LNT0320000.1 | 5 | 27385651 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa05LNT0320000.1 | osa-miR5526 | Cleavage | 2.5 | 17.81 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5526 | Cleavage | 5.0 | 15.865 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5806 | Translation | 5.0 | 20.584 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5179 | Cleavage | 5.0 | 16.682 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5516b | Cleavage | 5.0 | 12.953 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5512b | Cleavage | 5.0 | 16.325 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR1861o | Cleavage | 5.0 | 11.678 | 1 | 22 |
| Osa05LNT0320000.1 | osa-miR415 | Translation | 5.0 | 22.807 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR1861a | Cleavage | 5.0 | 11.678 | 1 | 22 |
| Osa05LNT0320000.1 | osa-miR1861d | Cleavage | 4.0 | 11.678 | 1 | 22 |
| Osa05LNT0320000.1 | osa-miR1861h | Cleavage | 5.0 | 11.678 | 1 | 22 |
| Osa05LNT0320000.1 | osa-miR1861j | Cleavage | 5.0 | 11.678 | 1 | 22 |
| Osa05LNT0320000.1 | osa-miR1320-5p | Cleavage | 5.0 | 13.615 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR2100-5p | Translation | 5.0 | 19.072 | 1 | 22 |
| Osa05LNT0320000.1 | osa-miR395x | Cleavage | 4.5 | 22.383 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR395x | Translation | 5.0 | 16.05 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5148a | Cleavage | 4.5 | 16.144 | 1 | 24 |
| Osa05LNT0320000.1 | osa-miR5148b | Cleavage | 4.5 | 16.144 | 1 | 24 |
| Osa05LNT0320000.1 | osa-miR5148c | Cleavage | 4.5 | 16.144 | 1 | 24 |
| Osa05LNT0320000.1 | osa-miR5152-5p | Cleavage | 5.0 | 14.926 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5152-5p | Translation | 5.0 | 13.912 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5516a | Cleavage | 5.0 | 12.953 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR395x | Cleavage | 5.0 | 16.284 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5152-5p | Cleavage | 5.0 | 16.469 | 1 | 21 |
| Osa05LNT0320000.1 | osa-miR5512a | Cleavage | 5.0 | 16.325 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa05LNT0320000.1 | 5 | QPl5 | Morphological trait | Panicle/flower | RG13 | RG346 |
| Osa05LNT0320000.1 | 5 | QFla5 | Morphological trait | Culm/leaf | RG470 | RG346 |
| Osa05LNT0320000.1 | 5 | nan | Physiological trait | Eating quality | C246 | C1447 |
| Osa05LNT0320000.1 | 5 | nan | Morphological trait | Seed | RM163 | RM31 |
| Osa05LNT0320000.1 | 5 | nan | Morphological trait | Seed | RM163 | RM31 |
| Osa05LNT0320000.1 | 5 | nan | Physiological trait | Eating quality | RM163 | RM31 |
| Osa05LNT0320000.1 | 5 | qGR5-1 | Physiological trait | Germination/dormancy | C246 | RM26 |
| Osa05LNT0320000.1 | 5 | qRA5-1 | Morphological trait | Shoot/Seedling | C246 | RM26 |
| Osa05LNT0320000.1 | 5 | qRDW5-1 | Morphological trait | Shoot/Seedling | C246 | RM26 |
| Osa05LNT0320000.1 | 5 | qRFC-5 | Physiological trait | Eating quality | RG470 | RG474 |
| Osa05LNT0320000.1 | 5 | qGT5-1 | Physiological trait | Eating quality | RM538 | RM480 |
| Osa05LNT0320000.1 | 5 | qRGR-5 | Physiological trait | Germination/dormancy | RM421 | RM480 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)