>Osa05LNT0320100.3

TACGAACTGAATTCAAAATTTCACTCGTTAAATGGATAGTAACATCCGAACGTATACACCAATCATCCGAAATCTATATGTCAAACTATTACACGTTGATCTATGACATGATGCAACAAAGCTCACATCGTTGCACAAAAAATACACTTGAGTTAATCATCGTACTTCTGTGAGTTTTTCATCTGTAACTGACTGCCCGACCATTTCCTTTCCCACACTGTTTGGAGCACTTACCAAGATTTTAATCCGTCCAGAAAAATACACATTCATTGATGAGCCCCTCTGATGAAGTGCAGGGTGAGCAACTGGTAGGCTATTTTTCAGTTCCAGTTCTTTCTTTGCCTGTAAAAAAATTGACAAATAGAACCTAATCACTTCTCTGTGATATGAAATTCCACGTAGTCACGCGGTAACAATGGTACCCTACCAACCTAAAATGTTTTTTCCTAATCATATTTTCTTTAAAGAGCGTAAATGGTGTGAGTACTTTCTGTTCTTCTGCTGGGCCCTCCAGAAGCAAGCCAGCGCCCCAAATGTACAGCTGGCAATCGCAACACCCAGGGCAGCTCCAATTGGGACGCTTGCAGCATTAGAAATCGATGAATCCTCTGAAACTATCTTCTTCTCTTGTTGCTGAAGAGACTCCATGTAGGTCTCCTTGTAGGATGATACAAGCTTCTTTCCATAGTAGTTAACCAAGAATTGATACACTGCATCCTCGTTCCAGTCCACAGCTCCATCGGTGACCTTGCTTGAGCGGTAGCAAGATGGGCAGAGCTGATTTGGAGGCCAGGTAACCTTCGGAAACAAGGGATCACCAGTTCCCATATCCTTTTCTTCTTTCATCAATCTCATATTGACTTTGTTATGTGTGCTCCATAACCAGAGACTGAGCTCACGAGCAGTTCTGAAGGGGGCTGACACGCTTGAACACATTTCATAAAAGTGCTTGCGGCATTCCTCACAGATGAAGAAGTTGTGAATAAAATCACATATTGATGTAAAGGTTGACTGGCTCTCTCCATCCCCAATTCGGACGGTTAGTGAATGCATCAAAACCCATAGACCACAGCTAAATCCTCTTGTTTCACTTTTACTGCCGCGGCAGAACAGCCAATATCCACGTGGCACCTCTTTTCCACAGATCCAGTGGTTCTCTTCCGCAACACTTTCCAACAATTTAGAACCCTCTTGTGAACTTAACGACAGATTCGATGACCAGTGATCATCGAAGTTAATAAGTAGCTCAGCAGATCCCCTTCGGCACCTCTTGGATGGGTGACGAGCCACCAAAATTTGTAAAAATCTGATGAGCGAATCACGATTCTTTGGTTTGATCGTCTTGCGCTCCAAAATTATCTGTAACGCTTGAGCTGTTGCTTCCTCAACATCGTAAATTGCTTGAACAATCTGCTCAGGATCCGAAGCATTCTTTGGAAGCATATTTTCATTCTCGTACTTTTTGTCTTCTAAACTGAAAGAGCTTTTCATCTGATTATTTATCCACTTCAGTAAACGTTCTGCTGTTCTTCCATCATCAATTAACTTTATTTCATTATTCTCTTGCTTGGGATCCCACTTAGCAGAAGCAAATTTTGTTGGTGGACCCCAAAGTAGGAAAGGGTAATGGTCAACTGAGAATCTATTGCAAAGATCGATGTTCACCTGTGCTTTGATGCACAATCAACCCTAGCCATCAGTATTAACCCTGGATGTGCAGCGTCCCGACCATTGAATAGTTTTGCAACCTTCTCATAATGAGGCTTGTAGTTTCTGCAAGCTGGACACCAGTGGGCGAAGAACTCGACGACGGCCCAGGGCTCCAGCGAGGCCTTGAGGAAGGCGTCGAAGTTGGTGGCGTTGAGGTCGACGGCGGCGTCGGCGTCGACCTCCCCGGGGCCCTCCCTGCCGCCGAGCGAGCGAGCGGCCGCCCCGCGCGGCGCCGCGGCGAGGGAGGCGGCGGCGAGGACGAGCACCAGGACGACGCGGCGCGCCACCGCCGCCGCAGCCATGGATCGGGCCACCGGATCTCTCTCCCGCCGCCGTGATCCGCTTCGGACACCTGCCCCC

Explanation	CPC Score
noncoding (weak)	-0.945116

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0320100.3	5	27475375	T	C
Osa05LNT0320100.3	5	27474180	A	G
Osa05LNT0320100.3	5	27475067	T	C
Osa05LNT0320100.3	5	27475611	T	G
Osa05LNT0320100.3	5	27475963	A	G
Osa05LNT0320100.3	5	27477190	G	A
Osa05LNT0320100.3	5	27477772	G	A
Osa05LNT0320100.3	5	27478071	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0320100.3	osa-miR5528	Cleavage	4.5	9.825	1	21
Osa05LNT0320100.3	osa-miR5834	Translation	4.5	11.533	1	21
Osa05LNT0320100.3	osa-miR399g	Translation	5.0	24.878	1	21
Osa05LNT0320100.3	osa-miR1425-3p	Cleavage	4.5	17.453	1	21
Osa05LNT0320100.3	osa-miR5144-3p	Cleavage	4.0	14.922	1	21
Osa05LNT0320100.3	osa-miR5486	Translation	4.5	14.837	1	21
Osa05LNT0320100.3	osa-miR399e	Translation	5.0	24.878	1	21
Osa05LNT0320100.3	osa-miR399f	Translation	5.0	24.878	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0320100.3	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0320100.3	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346
Osa05LNT0320100.3	5	nan	Physiological trait	Eating quality	C246	C1447
Osa05LNT0320100.3	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0320100.3	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0320100.3	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0320100.3	5	qGR5-1	Physiological trait	Germination/dormancy	C246	RM26
Osa05LNT0320100.3	5	qRA5-1	Morphological trait	Shoot/Seedling	C246	RM26
Osa05LNT0320100.3	5	qRDW5-1	Morphological trait	Shoot/Seedling	C246	RM26
Osa05LNT0320100.3	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus