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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0028900.1

TAGCATTTAAAAGTTATCTTAAGATATAAACAATTTATCCACATACATTTTTCCATTTAATTTCGTGTGTAACCTTCTTAATGCCCATATCCTACCCAAAACTTATATTTTGGGATGGTACATGAAGTGGTCTGATACAAATCAGGAGCAGAATCCAGTTGCATCATAGTAATAAATTGCTTTTCCATTTTTCACTTCATGGTATTGGCCATATTACTAAGGTCTACACTAGTTCTACAGTCAAGGTAAAGTTACAAGAATTACTTGTCAGTAACTAAAAGTAATATCAGCGCAACATCGCAAAAAGAAAAGGTACTAAACATGTCGCTCGCAAACTACAACTTACTGAAAAGATCCTCCATGTGTTAACTGTGAACTGTAACCAAAAACACCTTTACATGATTAATTGAGCCATATCCATGCTACCTGAACCACCATCTCATGCCAGCATTTATCGGGTCATGAAGAAAAGGAGTGTAGCGATGGATATAGGGATTAACTGTACGGCCAATTTTAAGCCAGATAGCTCTGTGATAACCGGCAGTGAAAGGAGAGTGATACATGAGCTTCAGTAACTGCCAGTACATGAACGTTTGCATAGGATTGCGTTGTCGCGAGAACAGAGACAAAATCAAAAGAAATCCCAACAAAATCTCCGCATTTGAACTCAGGAATTTGACTGCAGTTGTGTTTGTCTCAACCCATGTGCAAGGTTTCTCCAGATATGTCCTGTATAGAGAGGAATTAGTAAAATGGCGCCGTAGAAATCTGGCCACATGTTCAAGTGCCCAGCAAATCACTGGTACCAAAACAAGCTTCAAGTGCAGTTTAGACATGACAAACATAAGACAGTACATGAATGGTATAAAATCCTTTGACGAAGCTACATGGTGAAAGATCTGAGCAGCATGCATGTTTCCTGCTCTTGGTAGCCGATAAAAAGCAAACAAAGCATAGCCTGTGGTGCAGGTTGTGCCGAGAAGTGACAAACGATATCCCTTATATTGCAGTTGTCGTGGTGTCAGTGGAAGGATTCCAATCAATGCAACAATAAGAACCCAAGCAGTAACAGAAAAATGCAATGACCGCTGATCCAACTGCAGTGCAATTCTGCTTCTTGCGGGTCCAGCAGAATTCGTGCCATCTGAATCAGGAGATGTTGCATTATCACTGGCTGGTGTAGATTCTCTATCTGACGATGCTGGTGGCTGTGAAGAACTGGTTGAGGACATACCTCAAGAACAAAATCAGGATCCTACACCCTTTGTAAAATAATCCTCGTCTTGGACTGTTGGAACGGAGCCAATCGCCTGCTCCGACACGCCGCAGAGGGAGGGGAGAGCTCTTCTCTTCTCTTCTCTTCCCTTCTCCTCCTCGAATCTAAACTTGGCGGACTCCGAAGCAAAGGCGCAGGCACGGAGGCAGAGGGAGAAGACTGACTCCCCTGTCTCCCTTCTCCTTTTCTTCTTCTTCTTTTTTTTT

Coding Potentia
Explanation CPC Score
noncoding -1.06398
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0028900.1 1 25777678 A C
Osa01LNT0028900.1 1 25778937 A G
Osa01LNT0028900.1 1 25779924 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0028900.1 osa-miR1440a Translation 4.5 18.617 1 20
Osa01LNT0028900.1 osa-miR1847.1 Cleavage 4.5 11.106 1 21
Osa01LNT0028900.1 osa-miR2921 Translation 5.0 9.096 1 24
Osa01LNT0028900.1 osa-miR5339 Cleavage 3.5 21.607 1 21
Osa01LNT0028900.1 osa-miR5339 Translation 5.0 13.09 1 21
Osa01LNT0028900.1 osa-miR395o Cleavage 5.0 15.97 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0028900.1 1 nan Morphological trait Seed CDO118 CDO455
Osa01LNT0028900.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0028900.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0028900.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0028900.1 1 yld1.1 Physiological trait Source activity RM5 RG462
Osa01LNT0028900.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0028900.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0028900.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus