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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0320600.1

GGCGACACCGCGTGCACGCCCTCCGCCTCCCCAATCCGTCCCGTCTCCTCGCCCGCCGCCCTCGACTCCCGTCTCCTCGCCTGCCGCTGGCGCCGATCTCCATCCTGCTAGCAGAGGTGGCGCCGGCGTCCTCCTCCTGCTCCCGCCGCATTCGCTCACCGGTGAGCATCCTAATCCATCCCATCCGGCCTCGGCCTCGGCCTCGAATTTCGTCTCCTCACCCGCCGCTTGCGCCGATCCCCATCCTGCGAGCAGAGGTGGCGCCCGGCGTCCTCCTTCTAGCTTCCACCGCATCGTCGCTCGCCGGTGAGCATCCCTCCCTACCCACACCTCATCAGGTATTCTGCTTTATCCCTCAAAAAGTTTGGGGGTTCAACCGAAACAGGGTTAGATCTGCCTCTGCCCAGCTCCACCTACTTTCAAGTTGTTAATTTTGATTTCCGTTTTTAGCATATGTAATTTGGTTACTGAATCTCATCCAAACACCCTTATAGAACGAAAAATGTAAGCTCACATAATTTTTACTCATCCAAACTCACGTAAATTTCTTTAAGAAGAATCTAGACCACAAACTACCCATAGTCACACAAAATATCTTTTTATCAACTTATATTCTTATAAGTAATTTTTATTCCACAAAATTTCTAAAGGACATACGGTGACACTTGGCATTAATCTAATTTAACTTTTTTTTCTTTGTCAGGTTATAAATTTTCTAAGACATTTGTGCCACTTGGCATGAATCTAATTTAACATTCTTTCTTTATCAGGTTATAAATTGAAACCATTGAACG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.271133
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0320600.1 osa-miR408-5p Cleavage 4.0 15.755 1 21
Osa05LNT0320600.1 osa-miR1846a-5p Cleavage 4.5 17.711 1 21
Osa05LNT0320600.1 osa-miR1846b-5p Cleavage 4.5 17.711 1 21
Osa05LNT0320600.1 osa-miR1846c-5p Cleavage 4.5 17.711 1 21
Osa05LNT0320600.1 osa-miR2097-5p Cleavage 4.0 11.343 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0320600.1 5 nan Physiological trait Eating quality C246 C1447
Osa05LNT0320600.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0320600.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0320600.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0320600.1 5 tp5b Morphological trait Culm/leaf RM26 C1447
Osa05LNT0320600.1 5 qMRL5-1 Morphological trait Shoot/Seedling RM26 C1447
Osa05LNT0320600.1 5 qTDW5-1 Morphological trait Shoot/Seedling RM26 C1447
Osa05LNT0320600.1 5 qRFC-5 Physiological trait Eating quality RG470 RG474
Osa05LNT0320600.1 5 qRNw5 Resistance or Tolerance Other soil stress tolerance C1447 RM26
Osa05LNT0320600.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0320600.1 5 qRSd5 Resistance or Tolerance Other soil stress tolerance C1447 RM26
Osa05LNT0320600.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus