>Osa05LNT0321300.2

ATTCTACTCCTTCTGTTAAAAAAAACTAATTTAATATTGGATGGAACTTTTCCTAGTATGTTGTTCAGATTCATTGTACTAGAAAAAGTCTCATCCAATACTAAATTGGTTTTTTATGGGACGGATGAAGTAATGCAAAAGAGAACCATCAAATTAAATAAAGTATATACACACTATTTCCATTGAATGCTATGAATTGATCTACAATGCTGAGTTCAAGTATCTTACCAAAACACACAGCTGAAGTCATGGGATGGGCAAGAGTCATCATGTTGTCATGCAGATGGCCCATGAAAGCAACCAGTTTGGCTGCAGGCCACACATAGCCCTTGGAGTGATGCAAGAGCCATCTCTGTGTATATCCTCATAATAAAATGCGGATTTTTCATGGACAGGGTGTCAAGATATGCTCACATCTTTTTCCACAGAGAGCTGGCACATCATGTTCCATCATAATCGTGCATTAGTCTGTTTGATCCTACAAATCATTGGCAGGGCTGCAGCATTATATAGGAAAAAATCTGAATCGGTTAGCAAGCGCTACTACTAAAAAGAAGATAGCAAGTACTAACAAGCAGAAACAGTCGGTGGCCCAAATTTTACAGTTTGGACGATTTGAGTCCATTTTAGCCCCTGTCGGCTGAATAGCATGTAGCATGAAAGATAAGCATCAGTATGAACTTGAATACATTTGTAGTGAAAAGAAAGTAGGTAAGTAATACATATAAAACATGGCATGGATAAAAAATGGAGACCAGACTGTTAGAATTAGCTCCGTTTCAGTAAAAAACAACAAAGTACTCCATCCGTTTCACAATGTAAGACTTTCTAGCGTTGTCCATATTCATATAGACGTTAATGAATCTAGACACACATATGAATCTAGATTCATTAATATCTATATGAATGCGGGCGATACTAGAAAGTCTACATTGTGAAACGGAGGAAGTATGCTACAGGATACACAAAGGTGACTATAATCAGATAATCAGTTCAAGAAGGCACATGTAGATGTAGGGGAGCTTTAGGTTTTACAGCAGTAAGCTTCCTGCATTCCAGTCATTAAGCAACAGTGTGACACCATAGCAAAGTCTTTGCCTTGAACTAACACGTGCAGAGTGGAAAAAGTGGAAGCCATGGGGTGATGGGGGCCAGGCTTTTAGACTATCACTGTATCAACTCTTGTTCCCCAGTGAACCTCCATACTGATTGGTATGTGAGCTTCAAAAGACAGCTTCCTGAAAGCTATAAACTAGATCTTGAAGTCAACATAAGTGCAATGGGCTTCTGCGCTGCAGTAAAGGATCCAACTGAAACTTCATCATGGCAATTGTCTCTAGAGAGAATCAAACCATGAATCAAAATCGTCCGACGCATTTGAGGGTCCGGAATTAGGAGGAACACTGACACTTGAGATGTTGTCTTTGCCCTTAGCAGATGTAGTTTGTTTCTGTCCATTCAAGCACAGTGAAGTGTCAGTGAGCAAGTCGTCCACCAAATCATCAATAGATGTAGATATATCTATCTGGTTAGCATATCTGATGTCAATATTGTGGTCATTCTTGGAAGTTGAGCCTGGTTCAGCAAAACCTTCATTCTGGACAGAAGGAGAAGTCTCTGAAAGCAAGTCATCTAGAGCATCGTCACAAGCAGCAGTCACCGATGATTTGGATGAAGTGCTAGGTGTAACTTTCTTATCTGGTTGATTGACTTTCACATCTTGCAATGTTGATTTGTTTCCAAATGATTCATCTAAATTGGAGCCAGAAAGATGAGTTCCACCAAGCGTATTAAGAAGCATATCAAGTTCTTCTTCTGCAGCAACCACCTCAAACTTTGCCCCTTCACTATTGTTATTATCTTCTCCAGTGTCCAAATGCACAGAGTGAGAACTAGTCTTGGGTGATGATGTGGATTTATCTTCTTCAAAACATTTCAACTGACAATCTGCTTTCATTTGATCATCACAACGAATGCTGTCATGGTCATGAATCAAGCTGCCTTTAGCATCACTATCCACATCTGTGCCTCTTTGAATCTGTATTTGATTGACCTCAGATGCAACAGCCAGATCCTCAGGTAGCAGATCTTTCTCTAAGAAAAGCCTCTCAGAAAGCTTAAGCTTCGAAAGATGGGTGGCCAATGCATGCAGATCCATGGAGAGAAAAGGTACCTCGAAATCGGGTGCTAAATCATCTTCTAAGATGAAGTTGTCATCTTCACACCAGGACAAAATCTCTTCCCCTTTAGCTTCAAGCATAGAGGTTGAAGCCTGCATAAAATCGAATGGCGAATCCTGGGAGGAGAGACGCTGCGCCTCGCGGGGCTGAGCCCGAGCCTGCTCGAGCAGGAAGCCGAAGTCTGCGCCCTTGCTGCGCGGCGCCACCTCGCCGGTCCACTCCGAGGGGGCCGCGGATTCATCGGCATCGTCCTCGCCGTCGTAGCGGTCCCAGTTCGACGGGAGGTTGCGGCCGCGGGGGCCGGAGGCGGAGGCGGCGGCGGCGGCGGCTTCCGCGCGCTTCTGCCTGTGAGCGGCGGCGGCGGCGGGAGTCTGGTGGGCGCGCCGCCCCCGCACCGTGTGCGAGCGCTTCGCCTTCGCCGCCGCCTTGGGATCCATTGGAGGGAGAAGGGAGGGAGAGGGTTTC

Explanation	CPC Score
noncoding	-1.08616

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0321300.2	5	28072052	T	C
Osa05LNT0321300.2	5	28075887	A	G
Osa05LNT0321300.2	5	28074588	A	T
Osa05LNT0321300.2	5	28074748	C	T
Osa05LNT0321300.2	5	28076346	G	C
Osa05LNT0321300.2	5	28071729	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0321300.2	osa-miR395b	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395d	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395e	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395g	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395h	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395i	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395j	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395k	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395l	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395s	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395c	Cleavage	4.0	15.64	1	21
Osa05LNT0321300.2	osa-miR395a	Cleavage	5.0	18.541	1	21
Osa05LNT0321300.2	osa-miR159c	Translation	4.5	21.826	1	21
Osa05LNT0321300.2	osa-miR159d	Translation	4.5	21.826	1	21
Osa05LNT0321300.2	osa-miR159e	Translation	4.5	21.826	1	21
Osa05LNT0321300.2	osa-miR166i-5p	Cleavage	4.0	16.116	1	21
Osa05LNT0321300.2	osa-miR418	Cleavage	5.0	13.982	1	21
Osa05LNT0321300.2	osa-miR395m	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395n	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395o	Cleavage	4.0	15.64	1	21
Osa05LNT0321300.2	osa-miR395p	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395q	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR395r	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR1436	Cleavage	3.5	13.236	1	21
Osa05LNT0321300.2	osa-miR1439	Cleavage	4.0	13.392	1	21
Osa05LNT0321300.2	osa-miR395y	Cleavage	4.5	15.64	1	21
Osa05LNT0321300.2	osa-miR5338	Cleavage	4.5	21.044	1	21
Osa05LNT0321300.2	osa-miR5338	Translation	5.0	10.441	1	21
Osa05LNT0321300.2	osa-miR5489	Translation	5.0	20.907	1	21
Osa05LNT0321300.2	osa-miR5492	Translation	4.5	10.061	1	21
Osa05LNT0321300.2	osa-miR5503	Cleavage	4.5	17.791	1	22
Osa05LNT0321300.2	osa-miR169f.2	Cleavage	5.0	21.784	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0321300.2	5	qRNw5	Resistance or Tolerance	Other soil stress tolerance	C1447	RM26
Osa05LNT0321300.2	5	qRSd5	Resistance or Tolerance	Other soil stress tolerance	C1447	RM26
Osa05LNT0321300.2	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0321300.2	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346
Osa05LNT0321300.2	5	nan	Physiological trait	Eating quality	C246	C1447
Osa05LNT0321300.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0321300.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0321300.2	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0321300.2	5	tp5b	Morphological trait	Culm/leaf	RM26	C1447
Osa05LNT0321300.2	5	qMRL5-1	Morphological trait	Shoot/Seedling	RM26	C1447
Osa05LNT0321300.2	5	qTDW5-1	Morphological trait	Shoot/Seedling	RM26	C1447
Osa05LNT0321300.2	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa05LNT0321300.2	osa-MIR11336	86.364	154	1	154	6.81e-42	167

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus