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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0322600.1

CGCATAACTTTGCTTGCAAATCAGAAACCTGTACAACACGTACGTGTCAAGTTCATCATTAGTTCAGCTACCTAGGCCTATCAATTGGGAAAAGAGGGACCCTTTCAGCACAAGCAACAAAGGAGAAAAACTGAAGAAAGCGAATCAACCTAACAACACAGAAATGAAGATAGCCAAACATCCTGCAAAGATCCTAGCAAGATGTTCCATGTGCTGAGACCTTCTCCAGAAAATCCGTGGCCTAATGTGAAGCAGAACTCCACCCCTTCTGCTCCATGACTAACTTAATTAAAAACTTTCAGAAGATCCTACAAGATGTTGGGAACTTGTGCAGAGAGCTTTTCTTGCAATTCTCTGATCTTCCCACAGAGCTCTAGCTTCTGCTCCTTGTAGCTCTGAATCAGGAAATCCTTTCCTTCAATAACTTCCTTCAGATCACAGACCTCCCGCTTGAGCATTTCCACCTTCTCTACCTCTCCCTTCCTTTTCTCAATACCAATATAATGCAGCTCAGGGTCATCAACACTGCTATCAGCATAGCCATTAGCATGCCCATTGGTAGCATCTGATTGCCAATGTCCAGCTTGCAAAGGCTTATCATGAGAGAGTGCTTCCGCAACACAATGGTCTGCAATGATCTTCCTTAGATGCTGAATCTCTCTCTCAGATTCAAAAAGCTCTCGGCTAGCAGCATCCAACTGAGACTGCAAATTGGTGGTCTGCGTCACCTGGACAACAAGAGAGTTCTTAAGATCAACAATCTGAGCTTGCATCTCCGCAATCATCTCATCACGTCTCTTCAGCTGCTGCCTCAGCTTCTGTATAACCTCTCTCTTGTTATAGATGTCAGAACCTGATTCTGAAAAACAGGGAGAGCCAGAACTGTTCGAGTACTGAAATGGTTTACGAGGATCTTCGAGCCGATCAGGTGATGATGTCCACATGACACCACTGTTCTCTTTGCTTGATTCTGGCCCTGGTATCTCCACAAGAAGAAGAGGGGAGAGGTCAGTTGATTTTGGTAGAGGACTCCCAGGAGCCTGCCTGATTTCCACTCCATCTGCAACCGCTGACATACAACAGTAGCAGCTTGTTTGGTCATTAAACCGGTAGAGATTCGAGTGCAGATCACATGCCCCAGGCCTTCTTTTTACTTTGGGCATACTGTTTTGCTTCTTTGCATCGAACATTTGCTTTAATTTGCACCCAAGTCTGACTGACAGTGTGCTAAGTAAAACTCCTCCTGCAACAAGAACCCAGTTTGGTCTGCCTCTTTGGGAGTGATCAACTTTTCCTGCCTTCTGAATGCTCCCATTTTCCTTAGACTTCATCCTAAGATAAAACCAGTTTCTTCAGCCAATTGTACAAAGATACTGGCTTGACCTATATAGGCAGTACAACAATGTATTAAGTGCTAATGCTGCAGTTCCCATACTGACTTAGCAAAATACTACCTCCGTCCCATAATATAAGGGATTTTGGCTATGCAAGCAATTCTATAGCCAAAATCCCTTATATTAAAAAAGACTTGTTTTGCCAATACAATTATGCAACATAAGATTTGAAGCACCTTTTCTAAGAGGGGAACCATACAACCTTAGTGGATGGGTCGGCTACACACATGACAGATACATTTTACTTTGGAAATCCAAATGCTAAAGCTAAATGCATAGGAGTTATTCTTAGTTATATACAGAAAATGGAGGAAGTTGTGTTGCCGTATTAACCCTTGATAATACTCAACTTTGAGTAAATTGACTTTCGATTGAACAAGGCACAGGGCGATTTAGGATCCTATTTAGGTCAATTGGTGAAACATCACCACAACATCCATGATGGCTGGAGGATGGAGCAACAACAATCGATCATATCAAAGGACCACACAATTTACACAAGTTAAACTAGTGAAAGTCGCACCTGCTACAATCATGGTCAATCAATTCACCAATTCCTTCAATCGGAATCGGCAGTGGTACTAGATCATTATGAGTAGAATCCTACCCCGCAATCAAATCCCCACGCCCCTCCGCTGCTCGTAGCCATTAAAATATCGCGAAAAATGGGTTTGGTTTACCCGAATGGATCTGAGGAAGTGACCAAGCGATGTTCTCACCCACCACCAGTCACCAGTCAGTCGCGCACGTCCCCTCCGGCGAGTCGGGCGGCTCGCCCGCGGTCTCCAACGGCGGCCGGCAACCTCTGCCCACCGCGCGGCGCCGTTCCGCCTCCCGCTGCGCTCTCCCCGTGGCGGAGGCCGGTGGATGCGCCTCC

Coding Potentia
Explanation CPC Score
noncoding -1.18245
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0322600.1 5 29272862 A G
Osa05LNT0322600.1 5 29273084 A G
Osa05LNT0322600.1 5 29273297 A G
Osa05LNT0322600.1 5 29273330 T C
Osa05LNT0322600.1 5 29274139 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0322600.1 osa-miR5826 Cleavage 4.0 17.722 1 24
Osa05LNT0322600.1 osa-miR2864.2 Translation 5.0 17.27 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0322600.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0322600.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus