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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0322700.1

CAAGAACAAGAACAATGATAACAAAACTGAAGAGCCAGTACATGACACTTGATACACATTGACCCCTGGAAACAAAACCGTGAAACAGAATATCACATACGCTGGTCATCCTCAAGAGTAATGATATGCCTTCACTGCACCATTGATGCTGGCATGGCATGAACCCTTCTCTAGCATAAAAACCGCGTTATAGCCACTCCCTGGACATGGCAATTGCTCAGGGTTGTGTTTCGCCTTGGTGGTGGATTTCGCGAGGAAGCCTGTCTTTGCAAGTTATGCGCAGCTCCTCCACCAAATCCACTTCTGCTCGCCTTTCTGCTGCCTTTCGCCTCGGCGTTGATCTTCGCAATCCAACTCCTTTCCTTGTCCTTGAACTTATCATGGTCTCAAGTTCCTTTTTTCGATCATGCCACTTGGTTAATCTCTCCTTGAGTTTTGGTCTTGTAGATACTACCACTCGTGTCGGCTGAGCATCTGATTTTCGCAGAACCAACTTCTGATGTTGCAGCTTTTTTATCCCTCTAGTTTGTAGTTTACTTCTCTCTGCTGCCTGAAGCTTCTTGGCTACAATTTTCGCCTCTGCCTTTTCAAGCTTCTTCATTATTCTTTCCCTCTCTTTATTCCATAGGAACATTGATATCATCTCAGACTTTATCCTGTCATAGCTATCCCAATCCAGCTTATCTTGGCAGTAGTCACCATATTTTGCTGCTTCTGCAATGCTATTTGACCATATGCGAAGAACCTCCTGTCTTGCTTTGACAGCCACCATTCGCCTCTCCCAGATCTTTCTCAATGCAGCACCTATTTTGTCTTTGCTTGCTTGTCTATGCAATTGTCGATGTCCTAGCATTTTCTTCCTAACATGACATCACCTTGGGATCTCTAAGAGCCTCGGTAGTCCTTCGCTTGATGAGTTCCTTGTGCTCTTTGCTTAGTTTCCTCCCCTTTGTCCAGGGAACCTTTCCCTTGTTCGCTGCACCAATCTTCCGTCTTCTTTCAATTTCCTTCATCGACAAACCAGTAGTATAAGCATCAGCCTGTAGAGTTGATGGCTGACAAGGTGAATGTTCTTGCACTAGCTTCTTCACATCCCTCTTTCTTGTCGATGGCTGTAAGCAAGAGGAATGATGGGAACAGTGTTCATCCATGTCATGGACCAAATGTTTGTAAGCTTCTTGTTTCAATGATGACCGCGGCAAAATGAATTCCCGATAGTGGATTAATCGATTGTGTTCTCGAAATCTGTTTTGTTGTAGAACTAACTCCAACGCTGCACAGTACTTATAGTATGAGAATTTGATTCTTGAAGATGAGCCAGCACCATACTCAGAGGTCATAGAAGGCACCACCCTAGCACAATGGACGGCCGCCGCCATGGTTTTGCGGCCTTGCACCGCAGCACTCTGTTGCTGTTTCGAATCACCTGGGATGGGAAGATGCTTCAAAAAGAACAAAAGAACAAATCAAGTGAGGGCGGGAGAGATGCGGGATGAAGCGAGCAGGGAGGAGAGGAGGAGAGCAGCCACATCGTCGACCAAGAAAGAAGGTGCGCGAGTGCGAATGGGGATGAGAGGACGATGACCTTA

Coding Potentia
Explanation CPC Score
noncoding -1.17651
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0322700.1 5 29282894 A G
Osa05LNT0322700.1 5 29282940 A C
Osa05LNT0322700.1 5 29283466 C T
Osa05LNT0322700.1 5 29283812 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0322700.1 osa-miR5541 Cleavage 4.5 14.726 1 21
Osa05LNT0322700.1 osa-miR5824 Translation 3.5 7.722 1 24
Osa05LNT0322700.1 osa-miR1427 Translation 4.5 23.791 1 21
Osa05LNT0322700.1 osa-miR1857-5p Cleavage 4.5 9.193 1 21
Osa05LNT0322700.1 osa-miR5150-3p Cleavage 3.5 10.608 1 24
Osa05LNT0322700.1 osa-miR5150-3p Cleavage 4.0 15.256 1 24
Osa05LNT0322700.1 osa-miR5511 Translation 4.5 22.655 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0322700.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0322700.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus