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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0322800.1

CAGCAACAATTAATCCTATATATACATGCATGATGCATCAATGGCGCATCGACAATGGAGAAGAAGAGATGATCTCAGGATCGAAGCGAGGTCCAGGAGGCAAAGAGGAGAAGGTTCCACGTGTCAGGCAGCCCGGGCAGGCACCAGTGGCTGCAGTCGGCGTACGATCCCGGCTGCCGCCTCTGCTCCGGCGTCAGCAGCTTCCCTCCCCTGACCGTGAACACTGACGGGTGCGCGTCTCGCCGGAGCTCCGACAGCCGGGTGATGTCCAGGTACCCCACCGCCGTCCTCGCCCTCCTCACGTTCCTCTCCACGATCGACACCATCCCTCTCGGGAACGCCTCCACGTACTCCTCCGCCCTCGCCATCGGAGCCGTCTCGTTGTAGCACCAGTTCTTGTTCTTGTGCTCGGGGGAGATGCTGCGGAAGAACACCATGGTCTTGTGAGAGTCCACGTTTCGATCGAGCCACCGCGTCCATGTCCGGAGCGCGCGGTTGAAGGCTTCCTCCGCTCCCATCTCCACCTTCTTCCCGTTCCTCTCCAGGTGATCCCACGCCCTGAACTTGCCGGTGTGCGTCCACCAGTGGCCCGTGTTGAACACCAGCACGTCGGCGGCGGCGAGCCGGCGATACGTCGTCGCCGGGAGGCGGTCCAGCTTCAGCACCCTGGTCTGGTCGTCGAGGTCCACCAGGAACGGGCTCCAGTAGAACTCCACCGTGCAGTTGTAATCCAATGCTTGGAAGATCTTGTGGTCGGCGCTGGCGTCGTCGACGGTGGCGCGTGAGCGGTCGGGCGCCGCGGCGTAGAGGATGCAGGCGAGCGACTCCCACATGTTGCGGTTGAGCGAGTCGCCGACGAGCACCACTCGCTTGTCCCGGCACTGCTCCAGCATCTCCCCACCACGCAGCCTGAGAGCGGCGGCGCACCGCCTGGGCTGCCACCGCCAGTGCTCGTAGCCGGAGTCCGGCCGGCCGTTCCTCCGGCAGGTGACCTGGTCGCTCAAGAAGGGGCACTCCCCGGCGTCGTAGAGCGGATAGCCGGCCGGGTCGTACACCCAGCTGCCGTCGAACAGGTCGCACCGGACTTCATCCTGGGCCGGCGCCGGCGAGCCATCGGAAGCAGCAGCAGTAGCTGGGCTCGGCGCAGGTGCAGCAGCAATAATGGCAATGCGGTCGGGCGGCAATGAGATTGAGGACGCCTCGTCCGGTCGCTTGACGGGCTCCGGGTCGTCTTGGGAGAAGAGGAGGGCGCGGGAGAGGAGGAAGAGCGAGAGGCAGCCGAGGGCGGCGCCGGCGAGGCGCTTGCGGGTGGCCATGGAGGGTGGTTTCAGCTTCAGGGGATCCATTGCTAGCTTAGCTCCAACTGCTACTTCACCGGCTGCTCTGCCTCTGCCACTGCACTTTTCACTGGGATGGATGTACA

Coding Potentia
Explanation CPC Score
noncoding -1.18041
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0322800.1 5 29284895 T C
Osa05LNT0322800.1 5 29285731 T C
Osa05LNT0322800.1 5 29286615 C T
Osa05LNT0322800.1 5 29286723 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0322800.1 osa-miR169f.2 Cleavage 4.0 22.982 1 21
Osa05LNT0322800.1 osa-miR530-3p Translation 2.5 21.116 1 21
Osa05LNT0322800.1 osa-miR1846b-5p Translation 3.5 8.921 1 21
Osa05LNT0322800.1 osa-miR2093-3p Cleavage 5.0 20.137 1 20
Osa05LNT0322800.1 osa-miR2930 Cleavage 4.5 19.165 1 22
Osa05LNT0322800.1 osa-miR5144-3p Translation 3.5 23.077 1 21
Osa05LNT0322800.1 osa-miR1846a-5p Translation 3.5 8.921 1 21
Osa05LNT0322800.1 osa-miR1846c-5p Translation 3.5 8.921 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0322800.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0322800.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus