© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa05LNT0322900.2
AAACTCTGACGATATGCTCTTTTGTTCAGTGACAAACTGACAACAACTTTCATATCATGATGATTTACCGTCCTCCAGGCAGTGATCACTTTCTGCCAAAAAAAACGCAACTGTAAACACAACCAGGTTTCAGTATCGAGGGGTATCTATACATTAATTCTTCTCTAGTATGAGGTTTTTAAGTCATGCAAAAGTTTGTTCGGCTTTAGTAGTATGTAAGAATATATATATAAACATGATTGCAAGGACACTTGTACATAATATACAAGGCAGCTGCCTTGCCTTCTTTAGAAAAAAAAAACAGACAAACAAAAATGATTGCAAGGAAAGGAGCCTCAACTGCATTATTGGCACTTGGTGACATATGCTCAAAATCCTTAATAAGTAACAGAGCACAATCAAGCCTTGGCCTCCACATAGTTAACACCATTCCATTCCACGTACTGTTGCGACTGTGTAGTGCACAAGTTTACTTCCATAAAGCTTTATTCGGTTAATCCCCGTATGGGAGAGATTGAGGGGGATTAATTCCACACCTCAATAGGTGTGAAATTATTCATCTCCAAATTCTCCTCAATCCCCTTGTGAGTGGGATTAACCGAACTAGTCCTTAGCGGGATCTGTCGAGGCCAAGCCTTGAGCTGAGCCACTTGCCAACGTCGTCCATCTCTTCAGGGATGGTATAGTGGCCTAGCCCATTGTAGGATTTGAAATGCAGATATAAGAACCCCGAGGATCGCAGAGTGTCAGATGACCTCTCAGCATTCCTGTAGGATACAACCTCATCCGCTCTTCCATGGCTAAGTAAGATAGGCAAGGAGGCAGCTCTTCTTGCAGCTATGTGTGAGCTCTCCATCTTGCCCCTCAGGGTCCTGGAGCAAGGGAGCCATCCACTCAAGCTGATGACCGCGCTAAGTGTGATTGGGTAGGGGATGCCACTTGCGAATTTGCCATGAGCATAGCACGCAGCTGAGTAGAGGGAAGCAGCAGCACCCATGCTGAAACCACCAATCCCAAGCTTCACATCAGGCGGCTCTGACGACAGCAAGTTTGCAATGTGCGCAGCTGAAGCATCCAGTCCTTCAATGTCGTCACGGCCATCCACTGAAGTATCCTCCACATCAAACCATGCAGTGCAAGGGAATCCACCAAATGCTGTGACAGGCTGGGTTGCTGCGGTGGGGCAAATCCACTTGATATTTGGCAATGAAAGAGAATCCAGGAGTTGGGACCAGCTTGCACCATTGTCACCTAGGCCATGAAGCCACACAATGGTGGCTTGGTGCCTTCCCTTTGGCCTCACCACATAGGTCCTCCCGTACTCAACTCTCTGACCACCCCGTCCACCAGAAGAACTGCTTCCATAGTAACTCATGATGTTTTCTGCAGCAAGTCTGTACTGATGCTACTCAGCTATAGTACTATACTACTATTTCTGTATGATGTGCACTGAACGTCCGAACGTATGGAAGGGTATGAAGAGCACAGCCCCAGTTGGCATGTATTTATAGTGAAGGTTATCTGAAGAGGGAATATTATATGTGTGTGTGTGTGTGTGTTGGACACTCCTTTGAATCTGCATCTCAGGACAGTGCGGTTTTCCGCAGCAAAGCTGTCATAGGAGGAGCATCTGGAGTCTGGAATACTCAAGGGATGGTAGGGTAAAAAAGATTGAAGCCCTTTGCTCTAGAGTGAAGAATCCTGTACAATGCTTACAGCCTTGCACACAGAGATACACACACAGTGACAGTGACGGTGACGATGAAAGTGATGCCTAAACATATCATGCAAGCAAACTAAGGCCAAGGAGGAACCATATAATACATAAATGCTGTTTCATGTCCCTTTTTTCCCTTATTTTTTGTCTGCCAAGCATATATCCGCTTGTAGGATGGAGTACTAATGCCCACTGCATTCTGCCCACAAATTGTTGCAACTCCATATGGGAAAACTTTAAATAAAATGGCAAGGAATAAGCATAACGGAACAAATTGTCCAGTCATTGAGCTTTCTTTTCACATCATACTTACCAGTTACTGCTAGATGGAACTTCAGATGTTCTTGCTGGAAGTACAATTTCAAAAAGACGGAGTACAAATTCTGATTTTGGTATTTCAAGTTTTTTTATGCAGATGACAAAGCAGAAAGAATTTTTTTTTCCTGGAATGTGCAAAAGAACTGTGCGCCTTGCATTAATTTTAGGAGAAAGCAAAGCAAAAGGAATTGTATGCCACAACTTGTTTTGGCATACCATCAAGATATAGTGAAGAGTCCAGAAAGGATGATTACATTGGTAGAAATATCTATCAAGTGTCGACACCAAATCAACATGGATATGGGAACCAAATCAGACACAAGTGCAATTACACTTGCAGATTGCCTCATAAACGTGGTGCAATCTTCATGAAGGTACAGATGCTTGCAACAGAAACATGACATATTGTTGCTACAATTACGTCAACTGTTAACTGTAGCCATTCAATTAGTTAAAGGGTCATATCAAACTAGACAGTAGTTTGCCATAACATTTAGCTGTTGTTGACTTTATGCAACACAAGTTTTAATTTTCTTTTAGACTGGAAATTGTCTCAACCTTGATGCAATAATTCTAGTGAAATTTATCCTGTTTACACTGTTGACTATGCGAATGTTACTAAATAAATAGGACAACTACAGCCTTTTTTTTTACCTTTGATGAGCTAGCTTTATCTTACCCTAGATTTGCTTGCCAAGAAAGGTGGACAACTTTACCAATATGCCTCAGAAATGGAGCTGAGTTGATCCACCCTCAACAATAAAGATTAAAGATGAACCAAAAGTCAAATAAAAACTGACCTTGAATGAAATTTTGGTAATTCGGTAGCAGAATGATGCAAAAGGTCTGCATATCTTCTTTCAGAGAAAAAAAGGTTCACATCTGGTTTTTCCATGTGTTAGCCCACTACACACAGGAAGGATCATATTCTGTTCTCCTTTTTATTTTCTAATGATTGGTACAGGTAATGTGGGGGGCAGCCCAAGCCAGAATATGTGATTTATATGTCATTCTTGTCTCTCTTAGCACCAGAGGTTTGAGTCTACAGTGAGCAAGAATGAGGATGGGACATTAGCCACCTGATCTCACTTTTTCTCACACTGGAAATTATAGACTATGATTTTGTTGTGCCCTAGTACTATAAGCCTGCATATTCCTCCCTACGCACATCATTAATTTTCTTTATTGCACATGTTCCTGTGAAGAGTTAAGTTTTCTGTGAAGTCAGAAAAATATTCTAAAAAGGCCATGGAGAAGATATTGGATTTGTCATTACTAAAACATATAATTAAGGAAGATATGACCACAGGAAAAGATATATTCTTCTTTAAATGTTCTCTATTCTGTCCATGGTTAACCAAGTTCTTATTCATCAGTATTCTCATTCCAGTCCATTTCTGCTGCTAAAAGGATGAAACACAAGGGCAGTGACAATATGATAAATTGATATATGCCTGTAGTGATGTAGTATAATGCGATTACCGATACACAAGGAATTCTTGTGATTGCAATTCCTTGCAAGCAAATTGCTGATTGCAGATGCCGCCTGAATCAGCTCCCACCAGAGCCAAATCACTGAATAAAACAGGAAAAATATTACCTTTGGCCAAACCACTGAATAGTGGATACAACAGGCAAAATATTACTCACAGTAATAAGAAGTCTACATCAAGGCTTAACAGAAGTCAACTTCCAGGATGCAAGAGGGAATGTTGCAACATGAAAGATCCACGGCCACCATTAGACGAGGAATTATGCCTTATAAAGTACTGGGGCATTATGCATGCTTCTAATTACATTGCTTGATCGCCCAGAAATTCTTCAGTAAAATCTCCTCTCATTTCTATTTCATACTTTATTGAGAGAATCCTTTCTACTCATACTGTTGATAGTTCATGAGCTAATACTTTCTTCTAGAGTGTTTTCCTATATACATGCTCTCCTATTCTCTTTTAACTTTTAGACTTATAAAAATTACTTTGGGCGAGAGAAAATATAAGAAAGGCAAAGTGAAGTTGACATCACTAAGTGCAGAATTTATCCTATTATCACTTTATCAACCTTAGGCAATCCAAAACAAAGCGAATATTTATTTTCCTATGTGTTTGAAGTTGTGCGATAGGACATATATAATCAGTTGATGGTAGGAAAAATGAGTTATAAGTTGCATCATGTCTATAGGCTTAAAGAATCGAACCTGAACTTTTCGACATATGATCTCCCATAGATCAACCGGAATTTCTTTTGATTGCCCAGCCATTTTCTATTTCTAATGTGGTAGCCAGTAATCATAGTATTTGTTCTCATCAGGAAAAGGAAAAGAGAAAGCTATGGTGATTAGTTCGGCGATCGATCGATTGCAAAAGTATTTCCTTAAATCAATGATACTAAAAATTTTTGTTTCACACTAATATAAAATTTTAAATATTGGTGACTAAATCATATATTGGAAACCATGAAATGTCAACAAATGTCAAGTAAAAAGAGTATCTATCAAAATTCAAGGTGTTACAAAGCATACTAAAGGTTAATATATAGTAGAAGAACCAGATCATTATTGCCTAGATGTGGCCTATAAATGTAGAGTAACTAGTTTGTAAATGTCAATGCATACCTTCAAAATTCAAACAGTGGAAGGCTCGGAAAGAACATCCAACAGTCTATAATGTGGGGTCTGGTTTATCTAGCTTTCACATAGACAAAAAGGCATCGGACATAACCAGACCATCTCTAGTTTTTTTTTTCTAGTACATTCAACACTAAAACGCAGAGAGTCTAGAGTCTAATAGAAGTGAATATGGATATTTAGTCGGCGCGCAAAAGGAAACAGCAATGAACAAATAAAGCATAGCCATCTTTAAAAGAAGAAAGAAATGGCAAAGCTAAACAAAAGTACACGAGTAAAGTATCTGGGAAGTAAACATAGCTAGCATTGCGCTTGATTTGGGACAATCAATTTAGCAGGACATTTAACAGTGATTGCTATATAAGTAGACTTTGTTTCTCTTTTTCCATCTAGTTAAGATCAAAAGACTGCCTGCTGACCCAACGCAATCAGGAGCCTTTGAGGAGTCGCAACTCACAACTAAGCAGAAGCATCAGGATTCTCTCTGACACAGAGTATTAATGGTCTAAAAATACTACGTAACAATATAGCAACCACAAGGATAAAGAAGCTGTGCACAGGCTTCCGCAGGCAGTCAGTCCGCCCAGTTGATTCAGTCCATAGCTCAGGTTCACAATCACCTTCTGCCTGCCAAATCAAGAAACGATCTCAGTACATGGAATTGTAAAACTGACAAACAAGAATACATGGAGGCAGCATCGAGACATTAAGCCCTAGTATCCAAGGGAAAAGGAAAGTGTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa05LNT0322900.2 | 5 | 29298497 | C | A |
| Osa05LNT0322900.2 | 5 | 29294117 | A | G |
| Osa05LNT0322900.2 | 5 | 29295603 | G | A |
| Osa05LNT0322900.2 | 5 | 29296759 | T | C |
| Osa05LNT0322900.2 | 5 | 29297147 | G | A |
| Osa05LNT0322900.2 | 5 | 29297816 | A | G |
| Osa05LNT0322900.2 | 5 | 29299777 | T | G |
| Osa05LNT0322900.2 | 5 | 29300177 | A | G |
| Osa05LNT0322900.2 | 5 | 29300268 | A | G |
| Osa05LNT0322900.2 | 5 | 29300314 | A | G |
| Osa05LNT0322900.2 | 5 | 29300694 | A | C |
| Osa05LNT0322900.2 | 5 | 29301115 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa05LNT0322900.2 | osa-miR5536 | Cleavage | 4.5 | 12.776 | 1 | 22 |
| Osa05LNT0322900.2 | osa-miR818f | Cleavage | 4.0 | 16.641 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR396a-3p | Cleavage | 5.0 | 11.246 | 1 | 20 |
| Osa05LNT0322900.2 | osa-miR396b-3p | Cleavage | 5.0 | 11.246 | 1 | 20 |
| Osa05LNT0322900.2 | osa-miR172a | Cleavage | 2.5 | 14.881 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR172b | Cleavage | 3.0 | 14.881 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR172c | Cleavage | 3.5 | 14.881 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR172d-3p | Cleavage | 2.5 | 14.881 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR437 | Translation | 4.0 | 16.288 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR444f | Cleavage | 5.0 | 16.961 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR1850.3 | Translation | 5.0 | 16.957 | 1 | 22 |
| Osa05LNT0322900.2 | osa-miR1856 | Translation | 5.0 | 21.677 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR1856 | Translation | 5.0 | 12.908 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR1858a | Cleavage | 4.0 | 17.635 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR1858b | Cleavage | 4.0 | 17.635 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR1865-3p | Translation | 4.5 | 19.229 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1874-5p | Cleavage | 4.5 | 22.75 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1882a | Cleavage | 4.0 | 12.461 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1882b | Cleavage | 4.0 | 12.461 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1882c | Cleavage | 4.0 | 12.461 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1882d | Cleavage | 4.0 | 12.461 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1882e-5p | Cleavage | 4.0 | 12.461 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1882f | Cleavage | 4.0 | 12.461 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1882g | Cleavage | 4.0 | 12.461 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR1882h | Cleavage | 4.0 | 12.461 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR2101-5p | Translation | 4.5 | 9.872 | 1 | 22 |
| Osa05LNT0322900.2 | osa-miR2864.1 | Cleavage | 4.5 | 17.393 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR2864.2 | Translation | 3.0 | 12.445 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR2864.2 | Cleavage | 4.0 | 13.03 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR2920 | Cleavage | 5.0 | 13.769 | 1 | 23 |
| Osa05LNT0322900.2 | osa-miR5148a | Translation | 5.0 | 16.281 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR5148b | Translation | 5.0 | 16.281 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR5148c | Translation | 5.0 | 16.281 | 1 | 24 |
| Osa05LNT0322900.2 | osa-miR5151 | Translation | 4.0 | 6.161 | 1 | 22 |
| Osa05LNT0322900.2 | osa-miR5492 | Cleavage | 3.5 | 17.635 | 1 | 21 |
| Osa05LNT0322900.2 | osa-miR5492 | Translation | 4.0 | 12.498 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa05LNT0322900.2 | 5 | QPl5 | Morphological trait | Panicle/flower | RG13 | RG346 |
| Osa05LNT0322900.2 | 5 | QFla5 | Morphological trait | Culm/leaf | RG470 | RG346 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)