>Osa01LNT0029300.3

ACCTAAGATGACTTCATGGTTATTACCAAATGCATGTACAACATGCAAAAAACTTTACAAGTGGTTTGACAAACTGAAATTTGCAATTAAATAAAATAGCCAGTTGAGCAAAACATATTAATCCCTGACCTAATCTGAATCCGAAGCTCCTTTCACATGGAGCAAATTACTGATCAAATGTGCTCCGTTACAAATCAGTACTCACAGTTCCTGGCTCCTGCTTACGTCCTCACACAAAACTTAACACTCACTGAAGACAAGTAAGGACTTCATCTTGAATTTGTTCATAACAGTGAATTGCTTCATCCTGGACCTGGCTGCTTCTCTCCTGATCACCTGCAACTCCTCGGCGAGCAGCCGACTACAACGGTTTTGGTCTCTGAGTCAGCCATAACGAGGAGGCGGCCGGAGGGACTGCTCGGGGAAGGAGTGGATGTAGGCATATACAGGAGAAGGGGCAGACCAAGAAAGTAAATGTTTACTGCTAGAGAGATGTCGTCATCGTGGTCGCACTCATTTTGATCGCTGCCTTCAAAAAAACTGGATTCATATTGATTTTCACATCCTGAATTATCAACTACAAAGTCAGAAGTATTCATGTTTAGGTACTTTGAGTGAAGCGACTCATTGGTACTTCGTTGGGACCATAGTGAGCTACATTGTTGATGATTGTAAATGGGAGACGTCTTGGTGTGATATTAAGATGGGAAGCTTCACTTTTTCCTTGATGCAGCGGGGAAGAATCAGTCACTTCCAATTGGCACTTCATTATATCAACAGCGCTTATATTTGAAATATCGCCAAGTGGGGCTGAAACTTGAGTTTCCTCCTTCTTTCTTTTCCTTCTTTCACGTGCCTTCTTGTTCCTATCATCTTTTTGCTCTGGGGTCAATGCTGCGTACCGGTCTCTAGCACGCTTTCTTTTTAGTTCAGCCACACTAAGGTGACTAACATCTTCATGCAAACCTGTACACATATGCACATTGCTGGGTGTATTGAAGGACGCATCGCGGTTTTCCGCACATGGATGACTATTAGGCGTCACCACAGGATGCACAACATTTGAAGCAGTTGGGAGTGTTATTTGTAAAGACATCACAATTCTCGTCGTATCTTTCAACGGCACGTAACGACTTGTTTCCAACCTTGCCCCGTCAATTTGCCAAACCGGAACCACTTATATTGGTTATGTCAGCAAGAGGGCCTGATTTTGTAGTTGATGTTGTGGAGCCCCCAACAATCTTATCCATTTCTAGAAAGGATATATATAGAGAGGTGCAGCACTAAAAACACCAGGATGGCTGTAGCCTGGCTAGCGGCGTGGGGGCGAGGAGGCGCGAAGGGGACCAGACGACGAGTAATCGACGACGACTTGTTGGAAACCCAATGTAAGAAATTCAATCAAATGCTGAAACACTGATCTGATGTTGAGGAGGCCGGAAGCTGGCAGCAATATTCTGAAGTTAAATTCAACTGTTATTAGATACAAATCATGAGTTTAGGGATCCCAACAGCGTTGTCCATTGCTGTAGGCCAAGGCGTGGAGATCAATAACCACCGTGTAAGGCGTCGGCGGCGTCCTGGCGACGGGTACCCTGACAAAACATGCCGTTGCCAGAGCTCTACTGGCCTCAAACCACCTCTCCGCTCGGTCTCGGCATTGTAGCGGCGTGAATCCCTTTCCTCAGGCGCTCGGGAAGATGATGTCGATGACCGCGGCGGAGGTGGCGGCTGAGGGGATAAGCGTCGAAGCAGAGGAGGCGGGGCGGCGGGCGATATAGCGCGGAGGCGACCACGAGAAGATGGATGAAACAGCGATGGGGGAGGTGGCGCGGGTGTGGGAGATCGGCTTGGGGTGGGGGGGGGGGGGCGACGACGACTCAGGCGACTCCGGATCGGTGGCGGCGAAGCCGTCGGCACACGCGGAGGCGGTCGACAAGTCGGAGATTGGGGGCGGCGCGGAGGACACCGGCGAGGTGGGAGACGGCGCGGGCGGCGATTAGGGTGCGGGCGTGCGGCGTTGGAGGTTGTTGAGGGGG

Explanation	CPC Score
noncoding	-1.2106

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0029300.3	1	26066293	A	T
Osa01LNT0029300.3	1	26062491	A	G
Osa01LNT0029300.3	1	26063811	A	G
Osa01LNT0029300.3	1	26065801	A	T
Osa01LNT0029300.3	1	26067852	C	T
Osa01LNT0029300.3	1	26068245	G	A
Osa01LNT0029300.3	1	26069832	T	C
Osa01LNT0029300.3	1	26070814	A	G
Osa01LNT0029300.3	1	26071212	A	T
Osa01LNT0029300.3	1	26064996	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa01LNT0029300.3	DTM_#DNAt_MULE_japo_Os0202	Chr1	-	26066570	26066789	219

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0029300.3	osa-miR5822	Cleavage	5.0	15.283	1	21
Osa01LNT0029300.3	osa-miR398b	Translation	5.0	21.72	1	21
Osa01LNT0029300.3	osa-miR159c	Translation	5.0	17.809	1	21
Osa01LNT0029300.3	osa-miR164e	Translation	5.0	6.044	1	21
Osa01LNT0029300.3	osa-miR2095-3p	Cleavage	4.0	17.498	1	20
Osa01LNT0029300.3	osa-miR2875	Cleavage	3.0	19.71	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0029300.3	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0029300.3	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0029300.3	1	yld1.1	Physiological trait	Source activity	RM5	RG462
Osa01LNT0029300.3	1	nan	Morphological trait	Seed	CDO118	CDO455
Osa01LNT0029300.3	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0029300.3	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0029300.3	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0029300.3	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus