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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0323400.1

GTTAACCGATTCAAATGTCTTACACTTGCCCATTTACATGTATCACCACATACATATGCAATGTCTTACACTTTGCCCATTTACATGTATCCACACATAGTTGCTATCAGCACAGGCATTCGCTTCTCTATGGGAAAAAAAAAACCACCTATCTACTTAAAACCTGAAAACTATCGTAAGATTAAAAAATGGACATCTTTTTACATCTTATGCTAGTTTCCAAGTTTTTCACTATATATTTTCTCGACTTATCTACTGTACATCACTGCATAATACATCTTAATGTGTACGCCCTTCAAGAACAAGGATTGATTACCATGACCCAACTTCTTGCCTGCTTGTCTTGCTCCTACTCTCACCACCGTCAGACAATCCGCAATCTCCTCTTATCGCTCTCACCCATGAATCCACCTGTATCTCAGACATGCTCGAGCATTCAAACTTCAAACCTTGACTGGTCATTATGTAGAATGCGTATCTTGTTTTCTCATCTTCTGGCACAAAGTTCGGAAGCTGTCCCACTTCCACAATATCACACAGCAGTGTGGATTCTTGTGGACTTAGATCTGAAATCAGTACTTAGCTAAGATTGGACTCTGTGATAGGTGTTCTTTTGCATAAAAGTAAGACACCTAGAAGGCAGGGTTTACCAAACCGTTTGGGGTGGGGTTACTGCCACCCCACGGTTTTGGCGGTTACCGTGGTAACCACGTGGTTATCGTGAGGTATCAAAAACTGAGAAGGTTATCGCACGTGATAACCGCACGGTTTTGTAAACCCTGCTAGAAGGTTTATGAATTTAGTCGATCTAACTGTATCAAGATTCCAGCATACCCGGCAAAATATGCTGTTGCTGGGGCATTAAGTACATATGTTTCGACTGTATTTAGTGGCAGAGCCACCCCAACAATTTTTTTTCTCCAAACCAGCTAAGTACCAAATTATGTATTATCTAAGCTCTAATGCAGCCAACTGCTAATGGGCTAAAGCAGGAAACAAGCCAGGAGTCATCCCTGTGATCAATCGGTTAATTAGCCATGCCTCTAGAAGATCACAGTATGCATGTTATTTGTCTTAGGGTTCACTTTTAGTTATTATGAAATCTTAGTGGATACTGGAATGTTGGTTAGACATTTTTGCTGGGTAATTTTGTGAATATGTAATTTATGTGTTTATCAGACTAATGAAAAGGCAAAAGAATGTTAGATTGCTTTTACAAGACAGTTAGGGCAAAATATTCTTTTGTGTTGCCTAAGATGCCTAAACGCATATGTAATATATATAGATATGCTCTATTACCCTAGATGCAGAATATATATTGTCATCTTTTATGCCATTGCCTCTTGCCCCGCCTCATGTTCAAATCCTTGACCCGCCACTAATTAATGTGTGATTGAGTGACCAACACATGACATACTCCATAACAAAATATTTACCTGTAGATTTAAGATAATAGTATACACATTGCCCTTGCAGAACAACAAACCGAGGAAGCCAATCATCGACATCAGCATCATCTAGAATAGGTGGCTCTCCAGGAAGTTGAGTCCATCTACTTCTAATATAGAGATACCCAGAGAGCCGTGCATATCTCAAAACTTCATCAATATTTTCCAACCGAGCTTTTAACTGAGATTCCCTCTCTTCAGCATCAGCAATCTCGGTTCTTAATGATTCTACTTCAGCTCTGGTTAGCTCAATCTTGTCATCATCCTCAGTGCTGGAAGACCATCTTATGCGAGGAAGAGACAATAAATGCAAAAGTGATGCAGCTCCCATTACTCGTTTCGGAGTCCAGGAACGTCTACGTGAACTTGGTGGAGAATCCAGGTTAGTCTTACTTGTGGAGAGACCATCAGCAGGGGTCTCCATGGATTGTTGTGATGGTAAGAAGTGCTGGGGGAAGACCTCTATCCTTCCATAAACATCATCCATCCAACTATGTTACCTCTATTAGAAAGAGCATAGTCTGTTTAACACAATGCAAATAACTGTCAAC

Coding Potentia
Explanation CPC Score
noncoding -1.26788
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0323400.1 5 29664918 T C
Osa05LNT0323400.1 5 29665469 T C
Osa05LNT0323400.1 5 29666058 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0323400.1 osa-miR6247 Cleavage 3.5 16.777 1 21
Osa05LNT0323400.1 osa-miR164c Cleavage 5.0 12.265 1 21
Osa05LNT0323400.1 osa-miR171g Translation 5.0 8.024 1 21
Osa05LNT0323400.1 osa-miR1427 Cleavage 4.5 21.81 1 21
Osa05LNT0323400.1 osa-miR2871a-5p Cleavage 5.0 16.629 1 24
Osa05LNT0323400.1 osa-miR5515 Translation 4.5 21.733 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus