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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0323500.1

ATGTTCAAATTGGAAGTAAACATTGATGCATCTCATCACCACTGGGTGCACTAAAAGCAACATATATGATATATCCAGTCATTCCTAAAGGAACTATATGTGCTACCTAAGGACTATTATAAAAATTTATCCGAGAAGTGGATATCATTAAAAGCATACTCCAATGTTGATCTTGAGAAACTACTTAACAGCATGACAGTAATAATTTTGGTTGCAACATTTAACAGTTTTCACAGTATGTCTCCAGCTAAATCAGTGAATACACATTCACACCTGCAGGTAGTGCCAGCCATCCAGGTCCTCCCTTCTGTGCTGAGTGCTGACGCCAGCCACACTATGGATTAGCAGTGCGCAGGTCAGAGTTCATGCGATCAACTTCTGCATTAACACATGGCATTACACTTCCAGCCTCCACCGGATCAATCGATGTCTTCTCTTCAGAAACCACAACACCCCCAGCATCTGCAGGCCTAGTTTCTTTGTTCTCCACCGAAACTACAGCTGCAGTCTCTGGTTCCTTCCTTGCCAGTAAATCTGCATCTCCTTCGGGCTGAGCTGCTGTGACATCTCTTGACACCTGACCTGCAGCTTCTGCAAACACAGCTTGAAAGGAACTGTCCTTTCTTGGTCTTCCGCGACCTCTCTTGATCCCCATTGATTTAGCATCTCCAGTTTCAGCAGGCCTTGCTGCTGATGGTTTCTCCTTTTTTGGACGGCCACGGCCTCTCTTTCCCACCAATGTAGAAACTGTAGGTTCATTTTCCAATAGCACCTCCTTCCTAGGACTCCCAGGCCCTCTGTTCCCCATTGAAGAAGCACCATCAGAGAGCAGACACCTAACTTCACCTCCATTTTGAACGGCTCCAGCCTCACCTCCATCTGCAGTGTCTACCTGTGCTGCCACAACACCTCCAGCTTCCAGTGGCCTCTTCTTTCTTGGCCTCCCAGGCCCTCTCTTAGTCATTGCAGCACCGCCAGAGAGCACAGACCAAGATTGCAATGGTTTATCCTTTCTAGGGCGCCCACGGCCACGCTTCACTCCCAACACAGCAGCAGCAGTGGGTGGCACTGACAGCACAGGAGGAGTGGCATTCTTGCGAGGGCGGCCTGGTCCACGTTTGAATCCAGACGGCCTCCCAGGTCCAGGCTTGACTAGAGGAGTGGCGTTCTTCCTTGGGCGTCCAACACCCCGCTTCAGTGGAGATGCAGGCGGCGGAGCAACGGGAGAGGCAGCAGCAGCAGCATTCTTGCGCGGCCTCCCAGGTCCCCGCTTAACTCCCAGGCTCAACGGCGTAGCAGTGGCATTCTTGCGCGGTCTCCCAGGTCCCCGCTTCGCTCCCAGTCTCAACGGGGTAGCAGCAGCATTCTTGCGCGGCCTCCCAGGTCCCCGCTTCACTCCCAGTCTCAACGGGGTAGCAGCAGCATTCTTGCGCGGCCTCCCAGGTCCCCGCTTCACTCTCAGGCTCAACGCCGTAGCAGCAGCAGCAGCAGAGGAGGTGGAGGAAGCCACAGGGAGAGGGTTCTTCCGGGGTCGCCCGCGCCCAGGCTTCGCCTCAAGCACAGGAACCGGAAACAGGGCTGTATTCTTGCGGGGTCGGCCGGGTCCGCGCTTTTGAGGCGGCGCGGAGGAGGAAGCTTTCTTGGGCGGTCGTCCTCGTCCCCGTCCTCGAGCGGCGGTGGCGGAGGTGGAGAGAAGGTACGAGTGTCCAGACATGAGGAGAAGGCCCTGTGACCTGAGGCGGCGGAGGTGAACGGTGAGGAGCGCGTCGTGGTGAGAAGGGAGGCCGGAGAAGTTGTCGGAGATGTACTTGGCGATGGCACGGCGGCTGGAGATGATCGGATCTGGAAGCTCCTTGAGCGCCCGCAGGATCATCTCCTTGTAGGTCGGGTGGGGGCGGCCGGCGGCGCCCGGCCCCGGCGCCGACGAAGGTGAGGCGACGGCGACGACCATTTCCGTCCCCCGGTCTCTCGCTCGCTGCTTTTCCTCTTTTTTTTTCTTTTCTTTTTCAGTGGGGATGGGGGATCGATCGACCGGATCGGGGGTGATGGTTTAGAGGCG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.700006
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0323500.1 5 29761356 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0323500.1 osa-miR6245 Cleavage 5.0 11.558 1 21
Osa05LNT0323500.1 osa-miR529a Cleavage 4.5 21.257 1 20
Osa05LNT0323500.1 osa-miR1432-5p Cleavage 5.0 9.154 1 21
Osa05LNT0323500.1 osa-miR2907a Cleavage 5.0 20.778 1 22
Osa05LNT0323500.1 osa-miR2907b Cleavage 5.0 20.778 1 22
Osa05LNT0323500.1 osa-miR2907c Cleavage 5.0 20.778 1 22
Osa05LNT0323500.1 osa-miR2907d Cleavage 5.0 20.778 1 22
Osa05LNT0323500.1 osa-miR5157a-3p Cleavage 5.0 18.276 1 24
Osa05LNT0323500.1 osa-miR5157b-3p Cleavage 5.0 18.276 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus