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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0323800.1

ATATGAACCAGTTACCTGCAGTACTTTCCAAAGAACATATGTAGTAGTATATATGAGGCTCCCAAGCTTAAGCTAAGCGACCATTTATTTACATTAGTCAGGTAGTGTGATTCAGAGATTTCCACACACCAACCAACAAAAGCAGAGAGCCGGCCATCACAAAGAGAGCCGGCCACTGCCACCCCCACCCTAGTCGCACAACAGAGCTAGTCCATTTCTGAATATGAGGTGCATGCTGCTGTTCTCGTGTCTCCAACGAAGGTACATTATTCTCATTGCTATTTCTAGACTCCACTCTCAACAGCCTCTGCTTTAGATTAGTTCCACGGGGCTGATTAGCATGTACCAACATCTCTTCATGAAAGGAGAAGCCTTGGAGCTTGTCCATAACTTCCACTGAATGATCCACTTGAATAGGGGTATCCTCTTTGCACTGAATATGCATTGGTTCTCCATCCATAATCTGGGAGGCTGCATCGTCATTTTCCTCGCTGTGGTTATTAGATGAACTTCCAGTGTTACAACATGATCCAGCTTCATCTTCACTCCTGACACTTTCCTTCTTGTTATTAGATGAATTGCGAGTGTTACAGCATGATCCAGCTTCATATTCACTCTGCAAATGTGAGGATACAGGTTGAGAGACTGATGCCCTCTCAACAGAGCATACAAGGCGGATCCTTCTTGCAGCAGTTCCTTGTTGTGGATCAACGAGATCTTGAGCTGTCAAGTGCTTCATTGAAGGTGCCTGTTCCTGACCTTGTTCTTTCAAGGCATCTGAAAATGTCATGCCACTCCTGCCCGGTTCTACGATAGTATCGAACCAATGCTGGGGATAAGGGGTCCACAATCCAGCCCAACAGAAGGCTCCACTCTTTTGTGACTCCATGTGAGGATTGAATGCGGAGTGTAGTTGATCTTGGTTGCACAAGGGGGAGCCCTCGGCTACTCCACTGTAGACCATGCTGCTACTCTGGGCTCTTGCTTCAAGATTAGCATCACTTGTTTCTGTTTGTGGTGCATTGATTGAAGAAGAACAGCAAGTAGCATCTGTGTTGTCTGAATTAGAAGCATCTGATATGAATCATTCTTCCTCCAACTATCCATGAGTAATGTGTTATTGTTTGGATTGTTGGACGACGCGGTAGGATTAGACTCTACGTTTCCAGTGGGGTGCTTATCCATTTTGGTGTAATTTGGACTAAACAACAAACTTTGCAGGTCCTGCTCAGACAAGGTACTGCCAAAATGCGCTGAAAGATCTTGCTCACCCAGATTGCCGACAAAAGGGTGATCGCTGTAAGGGCGAATTGGAGAGGTGATATTAGGGAATCCATTGTATCTTTGCTCAGGCTCTAGGTCTGGAAGTTGAGATAACACGTCCAGAAAAGCATCGTCATGGGCTACAGTTTGCTCTTTGTCATGGACAGATGTACTAGCATCTTGTATTTCAGTCAGTTGGCTGAAACCAGATGATGGTAAGGTCTGATGATCCTTCATTATTGAGGCGAGGGCCGGTTGGACAGCAGGTGTGCCATTTTGGGGATTGCCTTGAGAAGACGTGGACAATTGTTGGTCCAAATTGGAGGCCGGGGTATGGGTATCATCTTGTTCGTGCTTGTTAAACAGGCGATACAGAACGAAGCTACCGTTTTTGCCTGATTGGAAGTGAGGCTCAGTGGTGCGGTACTCGTGCATGATCCAGGCGGTGCGGAGGCCCCGCGGAGCTCTGCCGCGGTGGAAGACGAGGGTCTTCTTGATGCCGATGAGGGGGCCGGCGGGGCGGGAGCGGATGAGGCGGTCCTTGCCGGTGGCCTTCCAGTAGCCGGCGGCGGTGGAGCGGTTGGAGCGGTGGCCGCCGGGATACTTGCGGTCGCGGGGGGCGAAGAAGAACCACTCGGGGTCGTCGGACTTGATAACGGACATGGCCGGGAGATCCCAGGGCTCGCAGGTGGAGAGGTCCACGTCCGGGATGAGGAGGAGGTCAGGGTGGCTCCGCCCAGCGATCTTTCCCTTCAGATAGTGCCTCACCAGCTCCTCGTCCGTCGGCCGGAAACGGAACCCCACCGGCAGAACCGCCGCGGCGGCGACCGCCGGCGTCATCTCCACTTTCCCTTGTTTCATCGCCACTTTTCCCTTCTCCGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.875374
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0323800.1 6 153810 A G
Osa06LNT0323800.1 6 153820 G A
Osa06LNT0323800.1 6 153933 A C
Osa06LNT0323800.1 6 154369 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0323800.1 osa-miR5798 Cleavage 4.5 21.733 1 21
Osa06LNT0323800.1 osa-miR5079b Cleavage 4.0 18.059 1 22
Osa06LNT0323800.1 osa-miR167a-3p Cleavage 4.0 22.853 1 22
Osa06LNT0323800.1 osa-miR166k-5p Translation 4.0 19.975 1 21
Osa06LNT0323800.1 osa-miR166l-5p Translation 4.0 19.975 1 21
Osa06LNT0323800.1 osa-miR1862f Translation 3.5 16.918 1 20
Osa06LNT0323800.1 osa-miR1862f Translation 4.0 17.783 1 20
Osa06LNT0323800.1 osa-miR1862g Translation 3.5 16.918 1 20
Osa06LNT0323800.1 osa-miR1862g Translation 4.0 17.783 1 20
Osa06LNT0323800.1 osa-miR5079a Cleavage 4.0 18.059 1 22
Osa06LNT0323800.1 osa-miR5507 Cleavage 4.5 10.57 1 21
Osa06LNT0323800.1 osa-miR5524 Translation 5.0 20.679 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus