\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0323900.1

ATGGGTCACATTGGCGAGGCTGGCGGCGGCGCTGTTGTCATGGGCTGCAAGGTGCTGCCGATGTGGAGGGAGAGCGGCGGCATGGTGGATGGCGCGAGGAAGACGATGGTGCATGGCAAGAAAGCTGTCGCTCGGGTGAAGGAGCTCCTCAGGCGGGCTGCTCAGCCCAGGTCCCCTCACCCTCACCCTCAGGCCACTGGCGCCAGCAGGTGGAAGAAGGTTATGAGCTTCCAGGCGAGGGATAGCAGCAACAGCAAAGCAGGCAACGACAGCACGAGCAAGCTGAGTTTCAAGTGGGACGCGGGTAGCTGCTCGTCTGCATCATCGTCGGCTATGTATTCCCCGCTGTCAGCCGTGTCCGCGCCGGCGAAGGCGCCGTCGAGCCAGCAGCAGCTGCGGCCTTGGTCCACTGTCCCTGATGATGGCGAGCAGCGGATGGCGCAGTGGATCACCACCGATTCAGACTTTGTGGTGCTGGAGCTGTGACCTCAACTAATCCCGTTCCTTGGGATGATGGAGTGGAGGCCAGGCAAGCAATTAAGCTGCAGATACTCATGGATGGCTCTCACTAATTTACTGACTGACTACATTCACAAGTTTAGACCGATGGAGGAGGGGAAGACGGAAGCAGCGAAGACAGTAGTATTATTTATGAATCTCAACGGCCAAGAGCAGAGGCTGCAGCTAGGTTGCTGCTGATCAATCCATATCATGAGGAAACTTGAATGGATTATTAAAAGTAATAATAACAGACCGGTTTATTACTAGCACAAGAGGAGAGTCATCGATGAAATACTAGTGCGATGTATAGTATACGTTTGTGTTTCTTTTTTCTTTGACACGTAGGATGTGTTTGTGTTGGTTGTCCTATTGGAGTGAGTGAATTTAGAGTAGCATACATGCCATGCCATGAATCGTTTGATCCTCTCTGTTTAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0441382
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0323900.1 6 190543 C T
Osa06LNT0323900.1 6 191179 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0323900.1 osa-miR820a Translation 5.0 23.072 1 21
Osa06LNT0323900.1 osa-miR820b Translation 5.0 23.072 1 21
Osa06LNT0323900.1 osa-miR820c Translation 5.0 23.072 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus