>Osa06LNT0324000.3

ACCATTATTTTCGCTATAATAAATGTAGTAGCAAAATATATCATTTACACAAGTGCACCACCATCTCATTCTCATCTCAAATCACTAGCTTGGCTAGATGCCAATGGCCGTATGGTATATACATTTGGCCCGTTCTTCACACATCCTGCTGATTCAAATCATCCATTTCATGGGCAACATCTCACATTTTCATTTCATTTCATTTCATATATTCTTCTTCTTCAACACCTACGTACTACTAATTTGCTGCTACAAGAGTCTTGTATGCATATACAAAACCTCAAGGCTGTGGAACCTCTTCCTTCAACTTCTCCACTGAACAGTTCTCACAGATGAATACAGACAACGTCCGTCCATCTCAATAATACAGTCTTCTTCATCAGCCTTGTTCCGTCTTGTGTTCCAACAAGCTGTCCCAGCGGCTTTTCAGGATCTCGTATGCGTCTGAACATGGAAGTGCGATTACACGGGAGCCGCCGTCAGTTGGCAGCTCAATCACCAGCCCCAGACGCAATAGTGTCTCCATAGCTTTGTCAATAGGCATTTCGATCTTCGCCTTAAATTTCTCGTACATAAACTGCTCACATGTATCTCTGATGCTTACACGAGATGACACCTGATACTTTTTCCTGCACAGTAACATACCATATGCCAAAAGCGCTTCTTTATACTGTTGTTGCTCAGAAGCGTCAAGGAGAAAATAAACTGAACCAAATCCACTTGCTAATGTCTTCTCATAGAGCGTTTTATTGACCAGAAGCTGGTATCTATCCCTAGTTTGTTTGTAACCCAGCGCCACACGGAACACAAGTATTGCTAGTGCAGTAAAGGCAACTATATCAAGAAGAAAAGCCGATTTACGGAGATGAGGCTAAACTCTCAAATTTGTAGTTCACGACATAAGCCAACAAACCTATTACGGTAGCAATATCCAACCTTACCTGTGTTAGGGAAGAAAAACATAACTATAGGTGCAGAAAACGGGGGAATAAGAATAGCAAACGGAATAGCTGTATAAACAGACGAAATGGTAAGATCTGTTTTCATGGGGAGGGATAAAATGACAAGAATTACTGTATCTAGGATGCGGAAGGACAACTTCTTGTGAGGAAAAACCACTGGCAGATCAGGGATGGGGATCCTTTCAAAAATTTTCAGTTGCAATGGCATCATGTCTGATTTTTCTCTCTCTTTGCTTTGATCAGCCTCATCAGTATAAAGTAGGATCAGTTCTTGGAATGCTGGTTCCTGAAGAGTAGACTTCCCAAATAAAACACCAAAAGAAGCTTTTGTTATCTCCCAGAGATTGTTGTTACAAGATTCTCTGCTTGCTGGCGCCCATATATTTGCAAGTGTTATTCTTGGCAGAAAATTTGGCCTCACATAGCCTTCAAGATCTTTTGTATCGATATCTGACTTTATTGTTGCTTCTGGCAGAGAAGGGATTAAACCAGTCCAAGCAAGCAATCTTCTTAGAAGTCTGCCACGAGGACCAACTGGTGACAGGATTCCTTCGTAACGAGAGACTGCCCTTTGAGCAGCAATCCAAATAGGAAGATCAGCATCCGGTAATTGATCAGATCTAAGTTTATCCCATGAAGAGTTCTCAATCAACGAAAGCGAATTCTCCGCATAGGTTTGCTCTTTAAGCCAGACTTTAAGTTTTTCAATCCAGATCTGAAATCCCTCATTCCCTGTTGATCTTTTCAATGCCTGCCATGAACTCATTGAGCCATTTCCCCAGCTTCCTCAAGGGCTTGGAGAAGCCAAAGAAGATATTTTGCAAGAGTTTAGACTGTAGGTAATCAAGCTTTTCAACCAACAGTAGGCCCTTCTGCCTCTCCGTTGCATACCCACGCCTGAATATGATAGCATTGGACTCAGCTGCCTTTTTCCAATCGACATAAATGGGCAAAGTCAAGAGGTAATCGGTGTTTAGGGCGTATGTCAAGAGCAGGTCTTGCGCAGAGAGCTCTTCAAATTGAGCATTGCGCAGAAGGTTCATGAAGGAGCGCTGGAAATGAGTTGCAAAAGCAATTCTGTTGTGTGAATCAGGGTCTGGTGACAATCCCAGGAGTGTTCTGAGACCCAAGCTTCTGGTAAGAAGCAAGGTTCCGTTGTCTGTAATGCCAAAAAAACCAGCAGTGGTGTTGGCGTTGCCGTTGAGCACGGATTGGTCATCGTCATCGTCATCAGCGGCAGCGGTGTGTTGGTGATGGTTGTGGGTGAGCATGTAATAGGTTCGCATTTCCTCGAGCATCTCCTTGTGCTCTGCGTGGAGGAGGGCGTCCAGGCATCTTGCAAAGCGCTTGAAGTCAGCAGCCGCAGCAGAGGTGGGAGAGGGAGTGGGAGGTTGGGATGGGAAGAGGGAGAGGAGAGCGTCGAGGAGGGCGGGCTTGGAGACGGCGATGTAGCGTTGGCGCGGGACGTGGATGCCGGGGATGGCCTTCCTCCCCTTCAAGTCGAAGTCGCCGTCGTCATCAACAGTGGGTTGGTTCCATGGGTCGGAGTCGGAGCGGAATTGGACGGTGGCGGAGGAGAGCTTTGGGGAAGAGGAAGAGGAGCAGCGCGTGGCCGTGGTGGGTGGTCTGCTGCTTATTCGGACATCCCCAGGAGGCGGAGGCACGGAGAAGGAGAGTGGTGGCTTGGCGCCGGCGCCGGCACGCAGTAGAAGGAGGGGCATCGCCGGCGCCGACGACGACGCACAGCAC

Explanation	CPC Score
noncoding (weak)	-0.724626

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0324000.3	6	277037	A	T
Osa06LNT0324000.3	6	278091	C	T
Osa06LNT0324000.3	6	278188	A	G
Osa06LNT0324000.3	6	279198	A	T
Osa06LNT0324000.3	6	279316	C	T
Osa06LNT0324000.3	6	279733	T	C
Osa06LNT0324000.3	6	279970	T	C
Osa06LNT0324000.3	6	280552	T	A
Osa06LNT0324000.3	6	280840	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0324000.3	osa-miR5526	Cleavage	4.5	11.321	1	21
Osa06LNT0324000.3	osa-miR5533	Cleavage	4.0	17.396	1	21
Osa06LNT0324000.3	osa-miR5543	Cleavage	4.0	8.943	1	21
Osa06LNT0324000.3	osa-miR5807	Translation	4.5	12.423	1	24
Osa06LNT0324000.3	osa-miR5143b	Cleavage	5.0	6.673	1	24
Osa06LNT0324000.3	osa-miR156c-3p	Cleavage	4.0	10.675	1	22
Osa06LNT0324000.3	osa-miR156g-3p	Cleavage	4.0	10.675	1	22
Osa06LNT0324000.3	osa-miR164c	Translation	4.0	1.195	1	21
Osa06LNT0324000.3	osa-miR816	Cleavage	4.0	10.793	1	20
Osa06LNT0324000.3	osa-miR1432-3p	Cleavage	3.5	14.041	1	21
Osa06LNT0324000.3	osa-miR1440a	Translation	5.0	19.754	1	20
Osa06LNT0324000.3	osa-miR1846a-3p	Cleavage	4.5	21.186	1	21
Osa06LNT0324000.3	osa-miR1846b-3p	Cleavage	4.5	21.186	1	21
Osa06LNT0324000.3	osa-miR1861c	Cleavage	5.0	16.624	1	22
Osa06LNT0324000.3	osa-miR2092-3p	Cleavage	4.0	19.821	1	22
Osa06LNT0324000.3	osa-miR5143a	Cleavage	5.0	6.673	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus