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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0324700.1

CAACATTGCCCGGTTCATGTAAAATCGAATATCCGCTGTGATGAAGCAGAACGTGCGACAGTAGCGCTCAAGAAAGAGGGGGAAGAAGAAAGCAAAAAACATGACTCTACCTAACAACAATTGTTACTGCTACTGTTCTAACCTGGAGGCCTATACAAACCAAACATAATGTATCAGAATGGCCCTCGAAACAGCTTGCACAGATCATGATTTATGGGAATTGCTGCCGATTGTAGGTGTCCTCGTGGACAAACACCGGTTCGCTGCTCTGTGGAGGGATCACAGGTTGGCCCATGGCGATGCCTTGGTTCTGCTGGGGACCCCAATTTGGTGGACTTTTCGCCGATGATAGGGCAACGTAGTAAACTATTGCCAGTGCCACGCTGGCAAGTGAGAGCACTGCCCCTCCAGAAAAGACCCCTGGCTTGACAACGTAGCAGAAGCTGCCAAAGTACATGTTCTCCTCACCCCGTTGATCGTTAAGTGCAGCTCCGGTCAGTAGGAGAAGGAACGCGATTATGAAAGTGGCCCTGCAGAATGTAACAATATCCAGGACGACGTTATGGCAAATAACAAATAGCAGAGTATTTTGCTAAAATATAGCATTCAGGAATCAGGACTTCCGCAAAATAAGCCACAACATTCTGATCTGAACCCTACCTTAGAATAAAGCACAGCTAACCCCCCAAAGATGTTCCAAGAAAAAGGTAGAATTGCACTTCACATTACTAATTGCACTTGAAATCTATGCAAAAGTTATTCTATTTAGCCATCATGTGAACCACTCATATGAATTCCTTGCAAAGAATAAAACAAACAGCAGCCTAATGCTAGTACGCTATCTCACAGAAAAACACACATGTTTTAATAAAGACTACTGAAATAAGGCATCAACTGCAAGGAACCTTTGTAGTGCCAAAATGACAGAGTCAAGAACTCCAACGCATTTGGCAACCAAGATCCCTTGTTTCCATAAAAACTGTTTAACAAACTGTCAAGGCTAAGTTAGGTTCAACATAACATAATAATATTCAGAATTCTCTTAGATCGGTAAGATAAGTTGAAACCCGTCAAGATAGAGGAAAAAGGTAAAATAACACAATAAACATCAAGGGTAGAGTTTTACCAAGACACGATGAATGAGATCAGAGCTACGCTCCAGTTAGTGTCTGAGGGAACTGGATGCCTCTTACAACAGATGCAACCAGCCACTGTATTTATAATAGACTGGGCGACCATAAGAGCAACCGCAGATATTAACCCTAGGGCTAAGGCTGGGCTTCTTGGGTATATGCATTGACCTGGAGAAGAAGTTTGCACATCTGAAACCTTGACGCGTGTGCCCTCCGCCGCGAAGCCGAGCGCCGCCGAGAGGACGCCGAGGAAGCCGACCACCGCGCACACCACCACCACCTTCCTCTCCATCTCCTCCTCCTCCTCCTCTACCAATCACCAACCTAACCTCCCACAGCTCAATCCACCTCCCTCTATCTACTCCTCCTTCTCCCCCGATTCCTACAGCGATTTTCTCTCGCTCCGCCGCTGCTTCGCCACC

Coding Potentia
Explanation CPC Score
noncoding -1.10347
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0324700.1 6 841438 A G
Osa06LNT0324700.1 6 841495 G A
Osa06LNT0324700.1 6 841740 A G
Osa06LNT0324700.1 6 841818 A G
Osa06LNT0324700.1 6 841860 A G
Osa06LNT0324700.1 6 841937 T C
Osa06LNT0324700.1 6 842319 C T
Osa06LNT0324700.1 6 843068 G A
Osa06LNT0324700.1 6 843168 A T
Osa06LNT0324700.1 6 843445 C T
Osa06LNT0324700.1 6 843518 G A
Osa06LNT0324700.1 6 842820 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0324700.1 osa-miR5079b Cleavage 3.0 24.342 1 22
Osa06LNT0324700.1 osa-miR1425-5p Translation 4.0 12.535 1 21
Osa06LNT0324700.1 osa-miR5079a Cleavage 3.0 24.342 1 22
Osa06LNT0324700.1 osa-miR5517 Cleavage 5.0 12.29 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0324700.1 6 qHD6 Physiological trait Flowering RM8120 RM1369
Osa06LNT0324700.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus