Transcript

Sequence

>Osa06LNT0324800.1

AACACTAGCTCCAAATATGGAACGAACTTGATATGGTTTATTTAGGCCAGAAAATGCTCCTGAGATTGATTGCGGTCAATATCATCCTGCAAAATTAATCCATTCTTGATTCTACTGGTGAATTCCGAAATGCAGTCCATACATTTGTTCTACACTTTACACTTTCTTGGGCTCAGCGTTGTTGAAGCATCGGCTTCCTCAAAAAAGTACAAGAAAAATACTCCATCAGACAACGACCACAAGGGGTAGCGGCGATCAGTCGCGCACATCGGCAGCCAATTCGGTGCTAGTGCTTCTCAAGGTTATCTTCATGTGTTCCAATTGGCTCCACTCTTGGTGTATGATGATTTCACAGGAACAACAGGATACTATGCGCAATGGTGCTACACGCTTGGAATTAGTAGCCAAGGAACTTTTATTCCATTTTGGATGGCGTAGTACCTACAGAATTTTGTGATAGAATCTACGTGATTTTGAAAAAAAATATTATTTTAGTAGATCATATCATCGGCAGAAGTTGGGGGTTTGTCCCATCTTGTCTTTTTTAACTTTTCTGTTCACGTCTGAATTTTTTGGCTGTGTGCCTACGGGCAGAGGCCGGAGATGTAACACATTTCCATTATCTAAAAAAAAAGGTCCGGT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.140719

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0324800.1	6	847313	A	T
Osa06LNT0324800.1	6	847367	C	G
Osa06LNT0324800.1	6	847700	A	G
Osa06LNT0324800.1	6	847879	T	C
Osa06LNT0324800.1	6	848777	A	G
Osa06LNT0324800.1	6	848069	G	A
Osa06LNT0324800.1	6	848087	A	G
Osa06LNT0324800.1	6	848166	G	C
Osa06LNT0324800.1	6	848192	C	T
Osa06LNT0324800.1	6	848330	G	A
Osa06LNT0324800.1	6	848395	A	T
Osa06LNT0324800.1	6	848471	A	T
Osa06LNT0324800.1	6	848487	A	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa06LNT0324800.1	DTM_#DNAt_MULE_japo_Os0229	Chr6	+	848056	848497	441

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0324800.1	6	qAC-6	Physiological trait	Eating quality	R2869	R1962
Osa06LNT0324800.1	6	qHD6	Physiological trait	Flowering	RM8120	RM1369

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus