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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0324900.1

AAACAAACATTACTGACACCAGTGATGTATTTCTTCGGAACTACAATTTTCTTTGGTTTGTCAATCAGAAGTTCAGGATTCAAACATGGACAGCACAGGAATACAAGATGTCAGGCTCATTTGCTCCAAGTGACTAATTCTTGTCTATCTCTATGATACTCAAACCTAATTACTCCTATCAAAATTTAGCTCGCACATGACTCTGGGTTTGTGACTTGTATTTGCTGCAGTGTCACGAACTACAGATCTATTCATCGACAGCGACAGAAACTGTGAAGCTGCCTGTACGACAACATTTGCTATTAAGCAAAGGGTTGCCCACAGTATGTGCATACAATCTTCGGATACTGCTACCTTGAAGATTGATCAGCTGCTCTAGCTTCCTGTGTTACAAGTCCATCATCCCCATGGTTCAACTCGGCAACATGACCCACCTGCCGTAGCTTACTTGGCTCCGTTGTCACACCCCTAGGGACTTCTCTTGACCGCTGGTCTGCTCTCTTGCATCCCCATTGACCTGCTGAGGCATAGCTCTGATTTGGCTCTTTGCCCGAGCTAAAAGTTGCTTCCTTATATGCTTTGTGCTAACATATTCATCTCTTTCTACTGCCCGTTGTACGGCCTTCTTAAGCCTGGACTCAACAGTTTCCCATGACACAAGCTTCTCTAGAAATGTGGAGACATAGTCAGATCTCCGATCCTCATAATCCAGGTAGTATGCATGCTCCCAAAGATCAATTGCAAGGAGTGGAGAGTGACCCCAGACAAGAGGATTGATGGCATTCGGAGACTTTGAGATGACCAGTCTACCATAATTATCAGATGGGATTGGGCTTCTTGATTTCACATGAGGCAACTTGCTTGTTTTGTAACAAAGCCAAACCCATCCAGAACCAAATTGAGTTGATGCAGCATCCATAAATTGTCGAATCATGCCATCATAGGATCCAAAGTCCCTGTTGATAAATTTCAAAAGGCGTTCTGGGGGTTTTCCCCCGCCACCAGGTTGCATAGATCGCCAATAGAAATCATGGTTCCATATCTAAAAGAATGTCCAGTAATTAGTCATATGGAGGACATACAGCTCAGCATACGGAATGATACCTGTGCAGCATGGAAGAAGGGGGGATGGGGTGCCTCCCTGCCCTCATTGAAGGAGGATAGCATCATCTGCCCCAGCGACATCCCCTCCCACTCACTGCCACCAATCATGCCATTGAGCCTCTCGACGTGAATGTTCTGATGAACTCCCCAGTGCTGTTCCACCGTCTCCTTGCTGATGTATGGCTCTAGGGCATCTGAAGGATAAGGAAGAGGCTGCTGCTCTATCCAGGAGACAGAAGCATCTTCATCAGTGCCTGACGACTCATCACCATTTGCTTCAGCATCCTCATCCATTTCAGCATCGGAAGCGGTTTCATCATCGATACCATCGTTCACAATGTCATCCTCGGTCACCACATTAGCCTCATTGGCACACTGGAGTACACGTGAGTTCGTACTCTCTCCCCTGCAGGCGCTCCCTCTCAGTGGGGTGACGAGGCGTCGGAGGCCATGCCGCCGGGCGTCGCCGCCGCCGCCGGCGCGGAGGATGAACGGGGCCGAGACGGAGGTGGAGCTGGAGCAGGAGAGGGGGCGGGAGGGGGAGAAGAGGGCAGGCGATAGGCCTCCCACTCCCACCAGTGTGGCGAACGCCATGGACGAGCAGTTTGGGAGAAAGCTTCGAGGAGAC

Coding Potentia
Explanation CPC Score
noncoding -1.10558
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0324900.1 6 866597 T A
Osa06LNT0324900.1 6 866683 T G
Osa06LNT0324900.1 6 864592 G C
Osa06LNT0324900.1 6 864797 T C
Osa06LNT0324900.1 6 864810 A C
Osa06LNT0324900.1 6 865275 T C
Osa06LNT0324900.1 6 865761 A G
Osa06LNT0324900.1 6 865868 G A
Osa06LNT0324900.1 6 866027 A G
Osa06LNT0324900.1 6 866158 G A
Osa06LNT0324900.1 6 866727 A G
Osa06LNT0324900.1 6 866729 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0324900.1 osa-miR444d.3 Cleavage 5.0 17.048 1 21
Osa06LNT0324900.1 osa-miR1877 Cleavage 3.5 9.125 1 24
Osa06LNT0324900.1 osa-miR2099-5p Translation 3.0 7.147 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0324900.1 6 qHD6 Physiological trait Flowering RM8120 RM1369
Osa06LNT0324900.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus