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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0325100.1

TGTCCAAAAACTATTTGCCCACACCTTGTTGAGATTAATTAGGAAGCGCATACAAATCGGGTAGAATGAAACACAATCAAATCACATTATAAAATATTTTGCTATAACGTATAAAACAACGGTTTTGAATATATTGAAACATGAAACAAATCCGAATACATCGAGGAAAAGAATGAAACACCATCAAATTAAAAATATTTCAGTGCTGAAAATTGTGAAACACAATCAAATCACACAATGAAACATTTTTCTACAACGTATAAAACAACGGTTCCGAATGTACCGAAACATGAAACAAATCCAAGTACATCCAAAAAAAGATGAAACACCATCGAAAAACCCACTGCAACGTTTCAAATTTAACTGATAAAACATCACGGTACATGGATTGAAACATAACAAATTCAAGAGGAAAACCTAGATCTACCTCTTCCACCACTCTTATGGTTAGCAACCACATCTGCGTCCATGCCATGCTGAGCTCCACCACATCCATATAGCCGCCGTCGTCGACGCCGCGGAGCTTCGTCAGACCGTCGCCGACGTCGGTGGCAGGGGCGTCGCGCTGCGAGGGTGGCTGTGGCCTCTGCCACGGTGGCCGCTTGCTCGGGGAGGTGGCGGCATTCGGCGGCGTCGCCGTCGCAGAGGAGGAGCAATTGGCGGCGGCTGCCGGCTTGGGGAGGTGGCGGCGTTCGGCGGCGTCGCCGGAGGAGGCACGGGGGCCGGCCACAGGGTGCTGTCGCATCTCCTCAAGGCGATGCTGCTCGCCATGCTCAAGCGGTTCGAGCACTGCGACGAGAGAAACGAGAGATAGAAGAGAGAGCGAGAGAAACGAGAGAGAGTCAC

Coding Potentia
Explanation CPC Score
noncoding -1.16404
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0325100.1 6 1054348 A C
Osa06LNT0325100.1 6 1054448 T C
Osa06LNT0325100.1 6 1054629 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0325100.1 osa-miR2918 Cleavage 4.5 11.643 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0325100.1 6 qHD6 Physiological trait Flowering RM8120 RM1369
Osa06LNT0325100.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus