\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0029500.1

ATTTCTTCCAATCTCCTTCGCGAACCCTGGCACTTGCACGCACACCTCGTGAAACCCGTTGCGAAGATCTCTCCCACACGGTGTCCATCCACCATGTGCCATCTCGTATCCAACTTCGTCACCCGGTATCCTTAACCGTCTGAACCTCAACTCCTCTATGAGTTTAGTCCCGATCCCCACCGTTGACCGAAGTTGACCTCTAAGAATCCGGACTCTAGTCACCTTCTCACATGGTATCCCGACCGCACTAGACCTTTGTTCCTCCCTGAATATAGTCCCGGCCCTCACCATTGACCAAGGCTGACCTCAAGTCACCCGTCGACAGCGATGCACCTATGGTGACTTCGTCAATCTTCAGGATAGATTGCCGGCCCAGTCTTCAAAGATGCTTATAGGGGTAGGGTTTACGTGCGTACTTTCATAGGGGTGAGTGTGCGTGCATTGTGAGTATCTGTGTTGTACCGTGTAATTCTCAAAAAAAATATTAAATGGTGAAACAAAATATAGTTAAGACTCTCTGTTGATACTTAGTAATTCATAATTTCTAAATTAAATTAATAAAAAAAACTCCAAAAAGTACTATAATAAGGCTTTGGCGTGAATTAGAATTAGAATAAAAGAAAAACATAATACTTGTAAAATTAGTAACAATAGCCCATGCAACGCATGGGTTGTTGGCTAGTATTTGTTAATTTCGAATAGAGATTTTATAACAGACTTGAATAAACGTGTTTTCTCCTTAAGCGTGGGGTGGCTATAATTAGTAATGTCGCTATCCGCTCCATCGCATCCCCCACCCTTGACCGCCTCACTCCACCACGTGCACCTTCACTCCCTCCTCCAGTCCTCCGCTCTCTCCTCCCTCCCCTCCCCTTCCCTCCCATTCCATCCCCACCCCACCACTGGCCCCTACAACATCGTTGCAAGAATGGTAATGGGGCATAAGGTTGAGCTGCGGTGGCGGATTTGAGAGGCACGAGCGGTGACGGAAGCGTCGGGCGGCGAGCGGCGCCAAGCGGCCTGAGCGGTGATGGCACCGGTTGCAGATCGAGGGCGGCGCCAGCTGCGGATCGAGGACGGCACCGCCGCTCCTATCTCCCCGTCGGCTGCCTCACCGCTCTCCCCTCTCTCCTTCCAGATCTGGCATGCTTCTCCCTCTCCACCCTCACTCCATGGCTACACCCTCCCTCTCAACCATCCGTTGTAAAAAAAATAAAAAACGGGCTAGCGACGATGATGATGGAGGGGAGGTCGCGGCGGAGGAGAGGTCGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.378229
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0029500.1 1 26247362 A G
Osa01LNT0029500.1 1 26246125 T C
Osa01LNT0029500.1 1 26246680 A G
Osa01LNT0029500.1 1 26246830 T C
Osa01LNT0029500.1 1 26246847 A G
Osa01LNT0029500.1 1 26246901 A G
Osa01LNT0029500.1 1 26247394 T C
Osa01LNT0029500.1 1 26247824 T C
Osa01LNT0029500.1 1 26248112 T G
Osa01LNT0029500.1 1 26248177 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0029500.1 osa-miR1437b-5p Translation 4.5 14.046 1 21
Osa01LNT0029500.1 osa-miR1876 Translation 5.0 23.03 1 24
Osa01LNT0029500.1 osa-miR2919 Cleavage 3.0 4.17 1 19
Osa01LNT0029500.1 osa-miR2919 Cleavage 5.0 15.237 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0029500.1 1 yld1.1 Physiological trait Source activity RM5 RG462
Osa01LNT0029500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0029500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0029500.1 1 nan Morphological trait Seed CDO118 CDO455
Osa01LNT0029500.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0029500.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0029500.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus