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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0325300.1

ACCGCACGACGCACGCGCTCTTCAGCCATGGCGTGCGCCGCCCTGCAGCCGCTGCTCCACCGCAAACCTCGCCGCCGGCGACCTCCGCTACGCCTCCTCCTCCTCCTCCTACCACCCCCTACCTATTAAATCCGGCCACTTCGCACCCGGCGACCCTTTTCCTCGCATCCGCGCTTGTCTCATACTCTCATATTCAATGAAAAAGCACTACTGTGCTGTTTTTTCCGTTCAAAAAAAAAAATACTCTCATTCCATACCGAGAACTGACTCCTGGTAGGCTGAAGCCAGGAAGGTCTTCGATGGCATGTGATGCAGGCACACGGCCGTGGCCCGTGTGCAACGCCTTTCTTTCGGCGTGTGCAAAGGTCCGCCTCGTCGGCTAGGCGGACAAGCTGTTCGACGAAATGCTATAGAGGAAAGGCGGTGAGGACCGCAAAGCTGTTCGAGGAAATGCTAGAGAGGAGAGACAGTGAGCAGTTCACTGCCTTCATGCGCAACAGTTGGGGGCGATGGAGCTGTGGAGTGAGGGGGATGAGTATGTGAGGGGAGACACACCTATGTCTTGGTGTTTTCAGGGGATTGGACGTCGGCGAAAACTGTGTTCTTCTGAATGACATTTCTCTCTTGCATGGTCAGCGGATGGAGACCCTCTTCTTGACCGTTTATGACAGTGGAGTGGCGAATCTAAGAAAAAAAAATACCTTCCATGGAAGAGGAGAGCATGAACAATTGTTGCAGCAAGGGTTGCAAAACCAACACCGTATGTGACAAGAAGGGAAGTACTGAGTCGAGGTGAAGAGGCCATCAGAAAATATGGGGAAATTTTGTGCCTTGTAGAAATTAAACCAGTATGCAATTGGTGTGATTATGTACATGACGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.327991
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0325300.1 6 1371228 G C
Osa06LNT0325300.1 6 1371526 T C
Osa06LNT0325300.1 6 1371785 A T
Osa06LNT0325300.1 6 1372315 T C
Osa06LNT0325300.1 6 1372354 T C
Osa06LNT0325300.1 6 1372367 G A
Osa06LNT0325300.1 6 1372586 C T
Osa06LNT0325300.1 6 1372705 T C
Osa06LNT0325300.1 6 1372731 G A
Osa06LNT0325300.1 6 1372971 A G
Osa06LNT0325300.1 6 1373016 G A
Osa06LNT0325300.1 6 1373385 A G
Osa06LNT0325300.1 6 1371442 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0325300.1 osa-miR528-3p Translation 5.0 13.769 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0325300.1 6 Hd3b Physiological trait Flowering nan nan
Osa06LNT0325300.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
Osa06LNT0325300.1 6 qCRE-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0325300.1 6 qVE-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0325300.1 6 qWA-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0325300.1 6 nan Resistance or Tolerance Drought tolerance RM170 RM204
Osa06LNT0325300.1 6 qHD6 Physiological trait Flowering RM8120 RM1369
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus