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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0326000.1

GGTTGTCAAACTATACAATGATCTGACGATGAATACCTGCAGACTACGGTTACATTTTTTAATTCTCGTGGGCTGCAGCGTTCTAGAGCCACGAGAAAATTCAGAGTTCAGAACGGGAGAGAAGAACCTACAGAACTTTAAACACAAAATTCTACCTACATCCGCTACAAACCAATGACAACCTTACAAAGACTGGCCCTAGCAAAGGGTTTAGGGAATGCAGGAGAAGCAAGATTTGCCTGATCTTCCCCATCTTTCCAGCTTGAATCACATCCGCGTTCATCAGCAAGCTACCGGATGGTGATGTACCGGTTTGTACCATGCTTAGCCCAGTGGTCCTTGAGGTCGACCGGCGTCGAGAGATCATGACCTTCGGCCGCTAGTCGGCTCAGCAGCTTTGTGAAGGCACCGCCGCTCATCTTCCGTCCCCCCATGCGAGCATGCCGCTTGTTCGGCATCACTGGGAGTGGGTACATGGAAATGTTCATGGTGCAACATGATGATTGCCATCCCCCGTTTCCCCACTTGTAGCATTGGCGAAGCTTCCCCGTGCATGAACAGGCAGGCGCGGGCATCGTGGAATCATCAAACGCAACTTGATTCAGACCAAGGTTTTGGTCCTTCCACTCGTTCTTCATCACAGAAGCATGAGCAGAATCATCTCCACAACCAGACATCCCGACATTCTTCCAGTCACCAGAAGGTTTCTTGGTTTTCCGGAGCACACCTGATGGCCTCTTCAATGGAGAGGCTTGGGAACTATTCTTCTTTGGCCTCTTTGCTTTTCCAGCACTCCCTGGAGCTGTTGAGATAGGGTATGCTTCTGATATGTGCATTTCTCTAGCATGATCATATGGAGAATCTGCCAGTTGCAGCGGTGATGACTGAGCATGAGAAAGCTGGTCGTGGTGGTGGATGTTCTTTGATCCGCTGAGAGATCCTTGGGGGAATCCATTCCCGTTATTCATGTTCAATCCGTTTGTACGTGCTAACTCAAGAGCAGCAAGGGCATTGTCCCTTTCCACGACTGCAGCATTACGCTCAGCCATTGCAGCATCCCGTTGAGTAAACGCCATATCGCGCTCAGCTATGGCTGCCTTCTTCTCAGCCAGAGCATGGTCCCTTTCTCGGATGGCATTATCTCTATCATTCATCAGTGCCAAGAGATTCATACTTTGATGGTCCTTCAGATGCCTTTGGGTCTGGGGCATCATCCACTGGGTATGAAGTCCTTTATATTGGTCTGGCCTTTGCCTCCCATTTTCTCTATGGCCAAGGTTGTCCATTATCACATTTGCTTGTAACAGAAAAAGGGGCAATTATTCGATCACCCTACAGTATCAGCAGCTTCCCCTCCTTCTAGAGGCTTCCATGTTGGGGGTGGGAGAGGGGGCGGGGCCCCGCGCGCCAGAGGGAAAGGAGGAGGACCCGCCGCGCCGCCGGCGAGCGCAGGAACGGGAGCGGCGGCGCCGCCGGAGGCGGGTGAGGTGGGGGTCAAAGCTGGCAGCCGCTACGGCGACCACCACCACCGCTGCTGCTGCTGCTGCTGATGATGCCGCCACCGCTACT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.896258
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0326000.1 6 1636847 A G
Osa06LNT0326000.1 6 1637165 G A
Osa06LNT0326000.1 6 1637486 T G
Osa06LNT0326000.1 6 1637579 A G
Osa06LNT0326000.1 6 1638121 G A
Osa06LNT0326000.1 6 1638628 A G
Osa06LNT0326000.1 6 1638973 G A
Osa06LNT0326000.1 6 1639288 A G
Osa06LNT0326000.1 6 1639547 T C
Osa06LNT0326000.1 6 1640412 G A
Osa06LNT0326000.1 6 1640827 A C
Osa06LNT0326000.1 6 1640497 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0326000.1 osa-miR5837.2 Translation 5.0 24.24 1 21
Osa06LNT0326000.1 osa-miR1850.1 Cleavage 5.0 18.818 1 21
Osa06LNT0326000.1 osa-miR5501 Translation 4.0 11.181 1 21
Osa06LNT0326000.1 osa-miR2918 Cleavage 4.5 23.052 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0326000.1 6 qCRE-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0326000.1 6 qVE-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0326000.1 6 qWA-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0326000.1 6 nan Resistance or Tolerance Drought tolerance RM170 RM204
Osa06LNT0326000.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
Osa06LNT0326000.1 6 Hd3b Physiological trait Flowering nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus