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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0326100.1

CCTGTCACAAGCCATGCAATTATATGCGACAAATTTAACATCCCCATCAGAAACCAACTTCTGCAGCTTAATTAATTCTGCCTCGACGTCCATATTATATTACAGTTCTGACAGTATATAGTGGAGCTACCTGGAGTACCGTCCAAGTTGGTCCCAATCATGCAATAAATACAGAGAAGAAAGAGCTGTATAATCAAAGTACACTTTATACTCCACTACAAGAGAAGAAGAAGAAGAAGGAATGAAGGGAAACGACTATATATATTGTATGTATTTAATTACTCCTGCAAATATATGGATATTGTTTCCCTTCAAGAAAAGAAAAGAAAGAAAGAAAATATATATATTTAATTTATATGGTAGAATATATTGCTCATCCTAAAATAGGGCAGCATCTTCTTAATTCTTCTTCTTCATGCAGGGCAGTCGATCGTTATTGCGAGTTCTTGTTTAATTTACCGGCCATTAATTAACTAACTTGCTTCTCTTGTCTCTGCTGTGCACTGCTGATCAGTATAATACGTACATGTCGCGTATAGTGCTGGAGTAGTAGCGTGTGACATGCAGCTCGGTGCTACTCGCCGTCGCCGGCGGCGGCGGCGGCGGCGCTCCGGCGCCAGATGTCTTCGAGCTCGGTGGCGAAGAGCTTCTCCTGGCCGACGATGATGGTGATGTGGTCCTTGTGGTCGTAGACGGTGACGCGCGCCCGGGGCACCCTGGCGCCGACGGCGAGGGTGCACTCGACGGGGAGGAGCTCGTCGTCGCGGCCGTGGAAGACGGCGACCTCGCAGGCGAGCTGGCCGGCGACGACGTCGAGGTAGCTGTCCATCTTGCCGGCGCTGCCGCAGATGATGTTGTGCAGCGTGTGCCACGCCGCGTTGTGCGTGTGGCACATGAACGCCTCGATCAAGAACGTCCTCATCCTGTTGCGGGTGAAGAGCCTGAAGAGGCGATCCCAGGTGCGGTGGTGCCTGCAAATGGTGAGGCAGATGGTCCGGCTGACGTGCTCGTACCAGCACGCCATCGACGCCCCGAACGCGATCGGCGGCCACACCCGCCGCGGCGCCACCCGCCGCATCACGTACTGCGTCGCCGCCCCCGCCTCCTCCTCCGGCACCGGGAAGTACGGCGGAGCGAGGAGGGTGAGGGACTGGACGGCGTCGGGGTATTTGACGGCGAGGGCGAGGGCGAGGACGGAGCCGAGCGAGTGGGCGACGACGTGGAACTTGCGGAGGCGGTAGCGCTGGAGCACGGAGCGCTCGATCATCTCGACGTGCTCCCGGAGCGTGTAGAGCGAGTCCGCCGGCTTCGGGCTCCGGCCGAACCCCAGCAGGTCGACGGCGAACATCCGGTACCTCCCCTTCGCCGCCTCGCTGAACGCCGGGAACACCGTCTCCGTCCAGAACACCGACGACGATATGAACCCGTGGACGAACACCACGTCCTCCGTCTCCACTCCACTTGCGGTGGTCGGGGATTGGACGTGGACGTAGAGGTGGGAGGAGCGGGAGGAGGCGCTCCATGAGTGGCAGACCTTGCAGTCGCAGTCGGACCAGCAGGGGGCGGCGTGGCGCGGCGGGCGCGGGGCGGCGCGGCCGATCTTGCCGCGGATGAGCTCGGCGATGGCGGGGCTCACCGTGAGCGACGGCGCGGCGGGGCCGGACTTCTTGGTGGCGTCCGACAGCAGCGAGGGGCGCACGTACAGCGTGTCGGAGACGTCCTCCAGCTGCATCTTCGCCGACGACGGCGACAGCCGCACCACCTTCGGCCCCGGCGCGGCCGACGCCGACGCCGGCGGCACGAAGATGGCGGCGGCGGCGCCGTCCCGCGCCGCCGCCGAGCAGTAGCACGCCTTCCACTCCGCCTCCACCGCGTAGTCCACCACCTTGTACACCACGCACAGCACCATATCCAGCAAATCCAAGAACGAGAACACCACGAAGCTCACCACGCAGTTCACCGCGCCGAGGAGCGCCACCGCCGCCACCCTCCAGCTGGCGGCAACGTCGCCGGCGCCGGCGCCCATGGCTGCCGCCTTCTCCTGCTGCCACACACAGGCAGTAGTGGCAATGTGCATTGCCGCGGCGCGGCGCCCGGTGCAGAGGAGTGGACAAGGTAGATGAGCTAGCTTTTTGTAAACGAAGGGTTTAAGTTGAACTAACTCGAAGGAGAAGGAGAGAGAGAAAAAAAGGCGCGCAATTAAGCGCGGTTGGAGGCGGGCGGATGGATTGGTTTGGTTTCTTGCGGAGGAAATTTGTGTGGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.262562
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0326100.1 6 1740774 T C
Osa06LNT0326100.1 6 1738187 A G
Osa06LNT0326100.1 6 1739743 A T
Osa06LNT0326100.1 6 1737145 A T
Osa06LNT0326100.1 6 1737885 T A
Osa06LNT0326100.1 6 1737975 A G
Osa06LNT0326100.1 6 1738200 T A
Osa06LNT0326100.1 6 1739543 G A
Osa06LNT0326100.1 6 1740117 A G
Osa06LNT0326100.1 6 1741441 A G
Osa06LNT0326100.1 6 1741602 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0326100.1 osa-miR5827 Translation 5.0 14.786 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0326100.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
Osa06LNT0326100.1 6 qCRE-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0326100.1 6 qVE-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0326100.1 6 qWA-6 Physiological trait Eating quality RM170 RM190
Osa06LNT0326100.1 6 nan Resistance or Tolerance Drought tolerance RM170 RM204
Osa06LNT0326100.1 6 Hd3b Physiological trait Flowering nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa06LNT0326100.1 6 1738266 Endosperm-type 10.67547894 -