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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0327100.1

ATAGTTTGAGGTGATTATTAACATAGATGATATATATTTGACACCAGTGAATAAAATCCACTTTCTCAATCTTGAGAGCAATTTGTAACTTCATTTATTGAGGTATTGCAACAAAGTTCTTATACAAAAAATTTCTCAAAAATACTAGATTTACATCAGAACCTGAACTGAAGATACCACAATTCATATCATGCAAGGGTGATACAACCGTGACCCTACATCAAAGGTGAGTAGTGGTCGACTGCAATCATATATGCACCGGCCTGCACATTCCTGACACATGTTAATCTAGTAGCTTCCGCGCCATCAGTTGTGACAGGAGCACCAAGACACCATGATCATAACAACATATATTTTTCAATGATAAGGCAAATCTACCACTTACAAAATCAAGTGGAATTTCCAACCATCCATGGACTCCATTCCATAACCTGGCCAAGCTTGCTTTCTCCCAAAGGTGACCTAGGATGCATAGCTATGCGGTAGTAGGATGCCCAAAATTTTCTTGCAAATCTTGATAAATATTTTGAATAATGCAGAGAGAGAGTAAGAACATGTACAAGTGGAATATCACCAACTGAATGCATATATAACACCAATTGTTGGCCCTAATTGTGG

Coding Potentia
Explanation CPC Score
noncoding -1.26797
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0327100.1 osa-miR319a-3p Translation 4.5 16.091 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0327100.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
Osa06LNT0327100.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0327100.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0327100.1 6 qAC-6 Physiological trait Eating quality RM190 RM510
Osa06LNT0327100.1 6 qGC-6 Physiological trait Eating quality RM190 RM510
Osa06LNT0327100.1 6 nan Resistance or Tolerance Drought tolerance RM170 RM204
Osa06LNT0327100.1 6 nan Morphological trait Shoot/Seedling OSR19 RM225
Osa06LNT0327100.1 6 Hd3b Physiological trait Flowering nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus