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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0327700.1

GACTCAGAAAGTACAATTCAGATCTTCATTATTTGCAGAAACAGAAGGATATGTAACTATCTACAGAAATGTTATATAGGAGCTAACATTGTTTAGGATCATTCATAGATGCAGGAATCTACAATACAATCGTGCAAGTACACATCTTGGTAGCTTGTACACGTCCTGCAACGTGAACTAGACATCGCTTGCTAGTAGACAGTAGCAGCTAGTAACCCATGGAGTTGCAGATTAACAGCATCGCTGATGATGTGGATCATGGCCAAAAAGATTCTCATCAACGGCTTGGTTGAGACTTTCACTTGGAGATTACTCTCATAAACCGGCTCACGGAACTAAATACGCCCATTACATTGTTCATCAATGATGGTGCCTCGTCAGATTGTTCATCGCCGCCTCCAAATATTATCTCAATGTCTGTTGCATCAGGTCGGCTTACAAGTTCTCGGGCAAGCAAATACCGGTTAGGCCTCTTTGGGTCATCATAGAATACTTTCCACTTTCCCGGATATTGTCGAAAGACTGCACCAGTTGGCAACGGTCTCATCGAGTAAACAGTGGTAAAAGTGCTTAGGAAATTCCGGCGCAGATTTCGAACATTAAAGCCAACTCCAACATCTCCACTAACAAGGCGTGGATTCCACATGACAAGAGGTCTTATAGGATCATCAGAGAGTTGAGATGCAATCCGTTCAACAGATTCCACCATCTGATGATCAGGGATAATCATAACAACAACTTCATCTTCAACGTCAACTGGTTTCCGGTCACTTAAGCTGGCGCACTTAAACTCTGCATCTGTCCACTGATACTTAAGAAGGGCCGCTGCTCCAGCATCAGGAAAAATGGCCTTAACTTTCTGGCCTGTCTCTTTTACAAGTGTGTCCAGGAATATCCTTGACAGTGCCCAGACCTCAGCCTGTGCTCCTTCCTCGTTGAGGAATTCCAACTGAGGGATCAGTAGCTCTGCAATGGCTCGCATGCCACCAGAGTTGACGAAATCGGCGCTCGCCTTCCCCGATTGCCATATCGCGCCCTCCAAGTCCGACGGCAAGCAGCTGTCGTCCTCCTCCGCTTTCTGTTCCGCCGCCCCATCACCCGCCGCCGCCGCCGATTCCGCCTCCTCGGCGGAGGCCTCCGTGGGGGCGGCGTCGGAGGCCTCGAACTTGCCGAACTTGGCGCGCGCGGGGGGCGGCGAGCGGCGGAGGGGCAGGCGCAGGCGAGGTGGCGCCGCGGGGGAGGGCGCGCGGGGCGGAGCGGGGAGGAGGCGGCGGCGGAGGAGAGGAGCAGCGCAAGCGCACGGCGGCGACGAGGTCGCCATTGCTTCGCCGCGGGGGAGGGAAGACGTGGTCGAGAGGTGTAGT

Coding Potentia
Explanation CPC Score
noncoding -1.00271
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0327700.1 6 2435865 C T
Osa06LNT0327700.1 6 2437126 C G
Osa06LNT0327700.1 6 2433985 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0327700.1 osa-miR1440b Cleavage 5.0 12.812 1 21
Osa06LNT0327700.1 osa-miR1854-5p Cleavage 4.5 19.695 1 21
Osa06LNT0327700.1 osa-miR2091-5p Cleavage 3.5 18.128 1 21
Osa06LNT0327700.1 osa-miR5488 Translation 4.0 20.357 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0327700.1 6 qAC-6 Physiological trait Eating quality R2869 R1962
Osa06LNT0327700.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0327700.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0327700.1 6 qAC-6 Physiological trait Eating quality RM190 RM510
Osa06LNT0327700.1 6 qGC-6 Physiological trait Eating quality RM190 RM510
Osa06LNT0327700.1 6 nan Resistance or Tolerance Drought tolerance RM170 RM204
Osa06LNT0327700.1 6 nan Morphological trait Shoot/Seedling OSR19 RM225
Osa06LNT0327700.1 6 Hd3b Physiological trait Flowering nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus