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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0328600.1

GTTGAACTTGCCGCCGCCTGACCCGCAGCACGTCTCGAACACCGTGCTAAATCCTACATGTCAAAAAATCGTAGTTGCCGGGGTTGCGGACCATGTCGTAGACGCCGGAGTAGAAGTCGGCGTACATGATGCGGGCGGACTTGTACTTGGATTGGAGCGCGGAGATCTTGGTCTTGAGCTGATTGTTGTGGTTGGTGGAGAGGTCGTTGAACTTCTTGAGGCAGCCGAGGCTGTCGTAGTCGGAGCTGGAGGAGGTGCCGTAGATGGTGAGGTAGATGGGGAAGCAGCCGATGGGGAGCACGCCGGGGACGACGACGTCGACGGCGCCCATGGCGATGAGCTTCTCGACGCCGTTGGAGATGGTGTCCACGATCTGCGACGTGTACGTGCTCGCCTGGTCCGCGCTGTACCCTCCGAACAGCATCGCATTGTAGTCGTTGCCGCCGAACTCCCCGAACACGAACAGCGAGTTCGCCAGGTAGCTCTTGCAATCTGAAATTTAATCGAATCGAATCGAATTGAATTCTTGTCAGAGATTTTGAAATTGTGTGGTGGGAAGAACAGTGAGTGAGTGATTATTACTCTGGCCGCAGACGGAGGAGGAGATTTGCTGGAACCACTGGATTTGAAAGCTGATGGGGCCGTTGTTCCAGATCTTGTCGGAGAGGCCGAGGGAGCGGAAGAAGTTGGCGTCCATGGCGGTGGCTCCGGTGATCGCCATGTTCGCTCCCTTCTTGAAGTCGGCGCTCGTCGACTTCGACGGCGGCAGGAACGGCAGCCCGAAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.759989
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0328600.1 6 2908571 G A
Osa06LNT0328600.1 6 2908644 G C
Osa06LNT0328600.1 6 2908693 A G
Osa06LNT0328600.1 6 2909239 G T
Osa06LNT0328600.1 6 2909141 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0328600.1 osa-miR5824 Cleavage 4.0 13.036 1 24
Osa06LNT0328600.1 osa-miR6254 Translation 5.0 23.938 1 21
Osa06LNT0328600.1 osa-miR167c-3p Translation 5.0 15.051 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0328600.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0328600.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0328600.1 6 d4 Morphological trait Dwarf nan nan
Osa06LNT0328600.1 6 nan Resistance or Tolerance Drought tolerance RM170 RM204
Osa06LNT0328600.1 6 nan Morphological trait Shoot/Seedling OSR19 RM225
Osa06LNT0328600.1 6 Qbph6 Resistance or Tolerance Insect resistance RM510 RM314
Osa06LNT0328600.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
Osa06LNT0328600.1 6 En-Se1 Physiological trait Flowering nan nan
Osa06LNT0328600.1 6 Lhd1(t) Physiological trait Flowering nan nan
Osa06LNT0328600.1 6 Hd3a Physiological trait Flowering nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus