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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0329400.1

CTCTCGAACTTCGCCACGGCCCACGGAGCAGCAGCGCTCCCGGCGACGGCGAGGAGCGGCGGCCACCGCCCTCGCGGCGGATTTGGGGTACCCCGCTGCCGCCCTTGCCCATGGCGGCCGCCGTTCCGGTGCCCTGGTCGCCGGAGTCGGAGTTCGACGGCGCGGAGGAGGCGCCGTCCGGAGCTCGATGCCGCAAAGAGAGCCCTCACGCCGCAGCGGCGCTGATAACTGTGCAGATGATGCCGGAGTGGAAGGATTCGAGATTTGATGAGCGCATCGGAGCAGCGCCAACAATGAGGACCTGGTGGTAGATTCCTTTAAACTATCTTGCGGTTTTTTTTTTCTAGTTCTTTTGGATCATACGGCTTGAGTGGTACTGAATTTTAGGCTCCAATTATATTTGTTTAGTTTGTTCCTGATCCATAAATCAATCGGTAATACTGGAAAGAATTTAGATTCCCAGTTCCCACGTCTTCGCAGTCTTGACAAATGGCAAATAGACATGTTCATTATTAGGCTGAATACATTCAAGTTTTACTATCGTCTACGTTGTTAGACTCAAAGGGTTGGTCCCAAAAAAAATGGATTTCTCTTGTACACTATATAGAACAAGGTTTACATGCATAGTTCAAATGGATGCATCCTTGGAGTGGGATGATGCTAGGATTAGTT

Coding Potentia
Explanation CPC Score
noncoding -1.03017
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0329400.1 6 3285942 T A
Osa06LNT0329400.1 6 3286025 T G
Osa06LNT0329400.1 6 3286293 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0329400.1 osa-miR2118a Translation 4.5 15.58 1 22
Osa06LNT0329400.1 osa-miR2926 Translation 4.5 18.753 1 20
Osa06LNT0329400.1 osa-miR2275c Cleavage 4.0 13.324 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0329400.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
Osa06LNT0329400.1 6 En-Se1 Physiological trait Flowering nan nan
Osa06LNT0329400.1 6 Lhd1(t) Physiological trait Flowering nan nan
Osa06LNT0329400.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0329400.1 6 qGYD-6-1 Morphological trait Seed RZ398 RM204
Osa06LNT0329400.1 6 qTLWR-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0329400.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0329400.1 6 qSLL-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0329400.1 6 qTLL-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0329400.1 6 d4 Morphological trait Dwarf nan nan
Osa06LNT0329400.1 6 Qbph6 Resistance or Tolerance Insect resistance RM510 RM314
Osa06LNT0329400.1 6 nan Morphological trait Shoot/Seedling OSR19 RM225
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus