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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0329600.1

GGGCTTCAAGCCTAATAGACTCCAAATGGTCCAGACATAATCCCTCACTTGGATCAGCCCATTGCCCCACTCTCCCCGTACTGCCGCCGCAACGAGAGCACCGTCAACCACAGCAGCAGCTCATGGCGCCGCCGCTCCCGGGGCCGGTGGTGCCCGGGGGTCGCCGGAGGCGGAGCCGAACGCCCGCGCGCAAGGCTATGTGCCGCGACGGCCGGTGAGCGCGCTGCCCGTATCTTGCTGCCCGGTGGGGGCGGCACGGCTCGGCGTGGAGAGCCCTTTGCAATGGT

Coding Potentia
Explanation CPC Score
noncoding -1.49353
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0329600.1 6 3293248 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0329600.1 6 Lhd1(t) Physiological trait Flowering nan nan
Osa06LNT0329600.1 6 En-Se1 Physiological trait Flowering nan nan
Osa06LNT0329600.1 6 qGYD-6-1 Morphological trait Seed RZ398 RM204
Osa06LNT0329600.1 6 qSLL-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0329600.1 6 qTLL-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0329600.1 6 qTLWR-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0329600.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0329600.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0329600.1 6 d4 Morphological trait Dwarf nan nan
Osa06LNT0329600.1 6 nan Morphological trait Shoot/Seedling OSR19 RM225
Osa06LNT0329600.1 6 Qbph6 Resistance or Tolerance Insect resistance RM510 RM314
Osa06LNT0329600.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus