© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0329900.1
AGTAGGATGCAATAATATATCTTAGCCGAGATCTACATAATACAATATCGAGAGTAAGCAAAATCTTCACTGTTATCATGGCGTGCACTTGTACAAACTACAAACACCCTGTTCTTTCAAGGGCAGACTACATCAGGGTATACAATCTCCTCAAAACAAGCATCATATGCTACTACCGGTTGCGTCAAGTTACAGGTTACGGATCTCTACTCGAAACAGCGCGAAGTTCGTAGCAGAAAGGCTATGGTAGCATAGGCGTTCGTGGCGCCTGCTTACGTGAAGGTGTCCTCCCTATCACCTTCTGCGACCTCGCCCTCGTCGATGTTGCTGAACTCGAGGAAATGCGTCGGCCGATGGTCCTCGTGATAGAAGTCCCGGGGCGTGCCAAGCTTCATGTTGTACTTCATCAGCGGGTCGTGCTTGACTCCCATGAAGTTGAAGTTCCAAGGGGTGTTATCCGGCACCATGTAGAATCCCAGGAATCTGTCGCTGAGAAGCATCTGGACCTTCTCGTAGTGAGTCGGGAGATATCCATGTGGGTTGCTTCCGGTGTCCTTGTTGCTACGGCCCCACTCGTAACCGCTTGGCGTCAGCTTGTACGCGGTCAATGAACAAGATCCTGGGGTAAAGCTGCATGTCAAAATGATGCACTTCTCACCGTCCCATTGCTTGTTGTTCTCCAAGATCTTGGCATGTGATGTCAAATCCTGTGGTGATAGCTGAGGAGCTTCATTTGGTTGGGTATGCATCCATCCCAGTGGCTCCAAATCATTAAGGAACTCGTGCTCGGGAAGGTTTGCAGGCAGTGTCACCATCTGATGAGTTCCGTGCTGCGGAGGAATAGCTATGCATCTGATCTCTTTAACTTGGGGATTATCCTGTGGGCTCAGCCCATACAGAAACCCTGCAATCTGTGTCCTTAAATCTGCTATGCATATGAACTTCTTTAATATATTCTTTGGCATAATGTAAGTGTAGCCAGTCTCCTTTATATCATCTGAGTTAACATAAATGTGATTGACACGAAGATACAAGTTTGTGGCAGAGATAGCCCTAACACGCCAATCAGTCTTTGATGCAAATGCTTGTTGCTCGTATGGACTGGTCGTTGTGATGATGAGCTCATCTCCATGCACATTGGTCGTCCTTGTAGTAACTGCGGTCAGCTGAGTCGTCTCTCTAGACTGTTTCTCAATTTCAGCAATCTGTTGCCTCTGCTGTGATGGTGGAGCTATTTCAGCACCAAGTATAATGTCACGAATTTCAGATTGTGTCAGCGCAGACGTATTAACATTGTTTTTCTTTGCATAATCAGACAGGATGAGGTCCCTGAGTGCACATTCAACCTTCAGCCATTGCTCATCAGTCAAGGTTGGCCAAATATGATGTGGTTCCGTAACAATAGTTTTGTCAGGCTTGAGCAGCATCTTTGCCTTCTCATTATTGACATGAAGTGCACGCAATATAAGCACAATCCGAGAGAAAGCAGTGAATGATGAGATACTTTTCAACCAATCATCATATATGTTGTAAAGAACCATCTGGGGTTCTGTGGCCTTGAGAATAAGATCACCGAACTTCTCAATCTTCAAACAAGCTTGGAATGGCAGCTGCAGCTCACTGCCCTTGATCACAATGTTAGGGAAGTCAAGCAGATGGACCTCCAAAGGATCCAACATACCCTTCCTTGTCACAATGATTTGCTTTGGCTGCTCTTCTACAGGAAGCGACCGAACTAATGCAGCAACCTCTTCAGCTGTTTTCCACTTGGCCAGTTGTCCAAGACGCTTTTGTCCAGCCCATACACTTGTGTGGATGACCTTCAGAAATAGTTGACCAGTTCTTGGATTGAAAATAAAAATAGCACCATTGATTGGTTTAGTGGTCAAGTTACCCTCAAATGTTTTGTGAATGGTAACTCGATAGACATTTGTGTCATCCACAAACCATATGATCTGATTGCTGAATATCTCTCCATAGTTCTGTGAAGACAAATACGGCTCAGTGGGTTCTGAAGAATACAGCTGTAGACCCTTCCTTATTCTCTCCCTCAGCACGTACAGAGCAGGATTTGACTTCATTATCTTGTTCATTGCTTGCTGAAGAAGGGGCTTTGACCCAGGGAACCAATTGCCAAAAGCAGAGTGCAAATTATATGCTAGATCAATTCCAATCATCACCCCTGTTGGAGATGGATATATCGACATATTGTCAGTAGTGTAGTCCATGAACTTGGCCCTTGTATAACGCTCAATGTCATGTGAATCATAGTCTCCCCATCGAAGTTGCACATCAATCCAATACTTGTTGCTAGCTTTCTGATCAAAGACATCCTTTGACTCAGAGACTAAGCTCGGTTTAGACATCTGCCACCTATGTGCAGCAAAAAGGAGGATATCTGCACAGGAGCTGTTCATCTTGTAACTCTTCCTCGGATGTATTGTCTCTTTCTGCACTGTCTCAATCTCCAGTGCATCCAGCTCTTGATCCAAAACTTGGCAAAGATCCATAACAACACTTTCATGGATCTTCTGCCACAGATGCGCACGGAAGATCTGGATTAAAGAAATCTTCAGGGTCGGAATTTTCCCATGCATGAAAATGCCCGTAAGATCTAGCTGAACCTGGAAACCAACATACACATTTGCACGATTGATGGTTGGTGACCACCACAGGGTAAATCTTCGGTTGGGTATCTGATTGAGACCAGAACGTTGTGCATTCGTCAGCTTCTTGTATTTCATGGACTCCTCAAAACCTGACGCTTTCTCCCAAAACAGACCCTCCCAAGTAGGGAAATACGTTCCTTTAAACAAGGTGTGTTCCAAAATACCCTCAACACCACCAAGAGCTTGGATGACATCAGTCCTATAGTTGTTTAGGTTCCATAGTTTTCCATCATGTCTCTGATGTGTCCACCAGAATGGATTTTGTTTGAGCACTTGGTACTGCTTAAAGTCTGTTCTCACTCTCCATCCTTTATCATATGCCAAAGTATGACGGTCTTTTTGGAAAAGAGTGTTGATACGAGGAATACCTCTATCCCATGAATCTTCAAGATCCTCAAGTGTTAACCGTCTGTTCTGTGATTGTGCTTCCTGCCTCTTCAAAGCATACTCAGCCCAAACCCGCTGTGAATCAATAAACTCACTCTCCCAGGGCTGAATGTAGCGATATAAGTTAGGGATAAGCTGGTCCTCTTCATGGCTCATACCACTCCGAAAATGTGTCACACCAACATCTGTCTGTTTGCTGTACCTGAGATCACTCTGTGGTATCAGAATGTGACCCATCGATAACATTCCCAGACCTCCAATTTCCTTGGGTGTATAGAAGATAACAGGCGGAAACCTGCTAGGCATTTTTGAGTTCAGTCCAATCTTTATGCGAGTCTGAATCTTGTTTTCACATTTGACAAGTAAATCCAAGAGCTCCTGGGTATGAACAGTTGCTTCACGGAAATATGTCATAAGACCAATAAGAGCAGTATTCCACTTGTTAACAATCTTAGTGAATGTAGTTGACCCTGAGGACATAAGGATTTGCCTGACACGGTTCTCAAACACTTTCATATGCTCATCATCAACTCTTAGAAAGGCAATAGCTGTCCTTTCTTTTGTCTGTTCATTCTGCAAGTTCCAGACTCCATCTTTGGTGTTACTAAACGCTTCTTGAGTCATCCGTATTTTTGGTAGTATACGAACCTCAAACCCACACATGCTAAACAGCAGATTAGGGTTGTCCTTGCTGTAAACAGAGACAAAGCTGTTCTCCCACTCTAACGTTGTGATGCTCCTTGGAAGGCGGTTCTTCATGTCCCAAAAAACACTTCTTCCAAGATTTACATCATGCTTCATGAGCCTCATTCTTGCGTCTCTAGGCCAACATTTCTTGTTGTTGTAACCGACCATGTTCTCATTATTAGGATCAGGATGCTCTGTCAAATAACGCTGAATTAAATCACGTGCTTCCTCATGAGTAAAGCGGAACATTATATGCACCTTATCAATATACCGAGAGTACAACCGGATAGGATGCCTTGTCTCAACTTTGGTATCAGCATATGTGAGGAACTCATTAGGCATTGTAGGTGGCCCAGCGATCTCACTTGCACGTGTTAAACCGAGCAGAAGGAGATCCAGCACAAGACCATAGTATTGCACAACAAATGATGCAAACTGTAGACCCCGAATGAGACCATAAGAATTAGTATGACTCATATCCTTGTAAGACAACACAACATTGTTCTTTGCAGTGACATAATCAGCAATATTATGGTCCAAGACCAACCGCAGAAGCCTGTTCAACAGTGTCAGATCAATTTTTTCGAAGAACTTCTCAAATTTTGTCTGCAGCATCACAACACACTGCCCGTCACTAGTGTCCCATACATCCTGTAGATTATTTATACCTTGGCACCATTTGTAAACAAGCAAAGGAGGTGGTTCTGAATCAGCAGGCTTGACCCAGTTCGGGAATAGGTGTCGCTTGTCCCCCTCATACCACAAGTACTGGTCAAGGTAGGCATCAGTGATTTTCTCAAGAGGCTCAATTTCATATACTGGGATCAGGTAGCTGTACAGGTCCATAAACTCAATGCCAACTTCTTTAAAAGCACGCTGAGTAAGAAGATGCCTCTTTATCCTTGAAAGCGCCTCATGAGGATTATCATATGCTTGCTCAATCAAGCCAAGTTCCTCCCGCTGCAGTTGATTTAACCTTACAGCCACGCTGTAAGACTCCTTTAGCCTTTCCAGAGCTAGTATAAGAAGTTTGGTGTCATGCTTGTAAGAAAGTGGAGGAAAAGGAATAGGCGAGAACTTCCTTGATTCAAGCCAATGAACTGTTGTTGTGTAAATAGCAACTGCCTCTTCAGGTGTAACATATGGCCCATCTTTCAAATAGTTGTGCTGCCTCTCCTGTTCTGCCTTCAGCCACAAACGAGTTAATCTTCCAAGATTCTTACGGCACACAGTCTTGTCAACCGTAGCACCACGCCTGATACGCTCACGATTGTAGTGAGCAACATTGGTCCACCAATCAGCCTTGGACTTTACATAACGAAGTATCATGTTCTCAATAGGAACAGGTAGGCCCGGGACCTTCCATGGGATATTTGCCTTCCAGCACCGCCATGCCTCACTAAGATGCTGCAGTATAGTCCGTGCCTTGTTTTGCTTGATACCCTCAGGCATAGCATCAAGGACATCATGCATAACAGCAGCTCGAAGTTCAAGATCGAAGTGAGACTCAACACGTTGTTTGGTTACAGTTTTAGCAACTCCTTTTGAATGACGACCTTCAAACTGCCTGGCCAGTAAATTACCTAACCATCTTTCAAGCAGTGGCACAATACCCCGCAGGAAAAACAGCCACACCCTCCACATTGGAGCCCAAAATCCACAGCCAGGTCCTTTTCCTACAGGACCAGTGTTGAACCTGTAGTATATCAAGTGCTTCAGATCTTTGCACATCCTGATTTGCCGCATCAGACGATACTTGTAGCGGTACATACCAGTCAGCTGGCCAACATGAGAGAATATGTATTGCAAGCCATCTGCTAACTGGAAAGCGTCAACATTTCCCAAGCGGAACTGGATGTTTGCATCAACAACTAACTTAGTAAGTCGTAATATCTCACGGCATAAATGAAATGCATTTCCAAACCGAGATTTTTTCCTTTCCTTCGTTGTGAGTGTCTTCACAGGTTTCAAATTGAAGTTGTAGTCCAAGTGAAGGTAGTTAAGGTTCTTTCTGTGGATCAACAAGTTCAACATATTGTAACCCTGTTTGCAAACTTGCAAACCTGCTTCTGCCCAGTCAAGCTCTGTTGTTTGAAAAAACTTTGTAGCTTGGAGTGAACGGAACAGGTGCTTCTTCTTCTGTGCCTTGGGAGGCCTATGATGTAGTTCATTGAGCACATAACACTTCAGTAGCTTCTGATAGCTGACACGCACCTTCACTGGATAAGCTGGTGGGCAGTGCTCCTTGTACCATTCAGATACAAGAGGGATATCTTCAGCACGACGTGTTCTACCAGATCTCATATTAAAAGGCTTTGGAGCAAAGAGTAATGAAATGCCAGCTGCTGTTGTATCAGTGTAAAGTTCTGTTCCTTTCAAGAGGGGCTCCACACCATCCGGGAGACGGAAGTCCTCATCTTCATCCTCTTCAGTTGTTCTCCTCTCCCGACGATCAACCTTGTTAGTCGAAGTTATAGGATTTATCAAAGGATCATAGTAAAATGCAGGCAAGTCTGGATCCTCTGTTTTGATATACATTATCATTGGAGTATGATATACCCCAAGCCTCACTTTCCTTGGCCTGTTATTGTACAAGTGTGGAAAAGCAATTCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0329900.1 | 6 | 3366212 | T | C |
| Osa06LNT0329900.1 | 6 | 3364111 | A | G |
| Osa06LNT0329900.1 | 6 | 3364179 | G | C |
| Osa06LNT0329900.1 | 6 | 3364434 | G | A |
| Osa06LNT0329900.1 | 6 | 3366174 | A | T |
| Osa06LNT0329900.1 | 6 | 3366358 | A | G |
| Osa06LNT0329900.1 | 6 | 3367286 | A | G |
| Osa06LNT0329900.1 | 6 | 3370169 | A | G |
| Osa06LNT0329900.1 | 6 | 3370322 | A | G |
| Osa06LNT0329900.1 | 6 | 3368620 | G | A |
| Osa06LNT0329900.1 | 6 | 3370731 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0329900.1 | osa-miR5806 | Translation | 4.5 | 13.028 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR812v | Cleavage | 5.0 | 10.762 | 1 | 24 |
| Osa06LNT0329900.1 | osa-miR1319b | Cleavage | 4.5 | 21.967 | 1 | 24 |
| Osa06LNT0329900.1 | osa-miR5837.1 | Translation | 5.0 | 14.444 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR5512b | Translation | 4.5 | 9.902 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR5512b | Cleavage | 5.0 | 14.072 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR395u | Cleavage | 4.0 | 21.328 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR156k | Cleavage | 5.0 | 12.97 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR162b | Translation | 5.0 | 20.479 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR168b | Cleavage | 4.0 | 23.845 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR413 | Cleavage | 4.5 | 19.846 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR437 | Translation | 5.0 | 20.057 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR444a-3p.2 | Cleavage | 4.0 | 17.835 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR530-3p | Cleavage | 3.5 | 21.741 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR529b | Cleavage | 4.0 | 13.834 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR444b.2 | Cleavage | 3.5 | 17.835 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR444c.2 | Cleavage | 3.5 | 17.835 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR444d.2 | Cleavage | 4.0 | 17.835 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR444e | Cleavage | 4.0 | 17.835 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR444f | Cleavage | 4.5 | 17.835 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR1438 | Translation | 4.5 | 18.048 | 1 | 22 |
| Osa06LNT0329900.1 | osa-miR1847.2 | Translation | 5.0 | 20.731 | 1 | 24 |
| Osa06LNT0329900.1 | osa-miR1850.3 | Cleavage | 4.5 | 20.489 | 1 | 22 |
| Osa06LNT0329900.1 | osa-miR1869 | Cleavage | 4.0 | 17.599 | 1 | 24 |
| Osa06LNT0329900.1 | osa-miR1846e | Translation | 3.5 | 22.243 | 1 | 20 |
| Osa06LNT0329900.1 | osa-miR2118d | Cleavage | 5.0 | 15.929 | 1 | 22 |
| Osa06LNT0329900.1 | osa-miR2870 | Cleavage | 5.0 | 18.066 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR2863b | Cleavage | 5.0 | 19.873 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR2871a-3p | Cleavage | 4.5 | 11.62 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR2871b | Cleavage | 4.5 | 11.62 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR3979-3p | Cleavage | 4.0 | 14.249 | 1 | 20 |
| Osa06LNT0329900.1 | osa-miR5158 | Cleavage | 5.0 | 20.683 | 1 | 24 |
| Osa06LNT0329900.1 | osa-miR5512a | Translation | 4.5 | 9.902 | 1 | 21 |
| Osa06LNT0329900.1 | osa-miR5512a | Cleavage | 5.0 | 14.072 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0329900.1 | 6 | Lhd1(t) | Physiological trait | Flowering | nan | nan |
| Osa06LNT0329900.1 | 6 | En-Se1 | Physiological trait | Flowering | nan | nan |
| Osa06LNT0329900.1 | 6 | qGYD-6-1 | Morphological trait | Seed | RZ398 | RM204 |
| Osa06LNT0329900.1 | 6 | qSLL-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0329900.1 | 6 | qTLL-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0329900.1 | 6 | qTLWR-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0329900.1 | 6 | alk6-1 | Physiological trait | Eating quality | RM190 | RM253 |
| Osa06LNT0329900.1 | 6 | hr6 | Physiological trait | Eating quality | RM190 | RM253 |
| Osa06LNT0329900.1 | 6 | d4 | Morphological trait | Dwarf | nan | nan |
| Osa06LNT0329900.1 | 6 | nan | Morphological trait | Shoot/Seedling | OSR19 | RM225 |
| Osa06LNT0329900.1 | 6 | Qbph6 | Resistance or Tolerance | Insect resistance | RM510 | RM314 |
| Osa06LNT0329900.1 | 6 | AsTol | Resistance or Tolerance | Other soil stress tolerance | RZ516 | RG213 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)