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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0330200.1

CGCCATGAATCGCACCCCCCTCATCGCGCCGAGGGAGACGACGTGGCGGGATGCCGGCTCGGCGAAGTCTCCGCCGAGGAAGACCCCATCGACGGGCCCCGCCGCCGCGGCGGACGACGCACGCACCGCCTCCGGCACCCCGGACAGCACCGTCCGCCCATGGACCGAGAGCTCCCCACCAGCGACCTTCACCGACGACGTGACCGTCATCTCCGACGACGACGCGGCGCACCTGCTCCGCCTCTGGCACCGGCGAGAAGAGGAGGGGAGAGGGGCGGATGCGATGGGGGGAAATGCGCGGGAAGGGAAGGTATATATGGTGCGCGGGCGCGGGAGAAGGGGAGAGGAGGAGGCGGGCGGCGTGGCGCGGGTGGTGGAGATCATGAGCAGCCTTCGCGCCACCGGCACGGACATTGGCGGGGGTGATTGGCGGCGGCGGCGGCGGCTGGATCGGATCGGGTTGGTTGGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.910922
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0330200.1 osa-miR2102-5p Cleavage 4.5 21.034 1 20
Osa06LNT0330200.1 osa-miR2930 Cleavage 3.0 12.157 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0330200.1 6 Qbph6 Resistance or Tolerance Insect resistance RM510 RM314
Osa06LNT0330200.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
Osa06LNT0330200.1 6 Lhd1(t) Physiological trait Flowering nan nan
Osa06LNT0330200.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0330200.1 6 En-Se1 Physiological trait Flowering nan nan
Osa06LNT0330200.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0330200.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0330200.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0330200.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0330200.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0330200.1 6 qSLL-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0330200.1 6 qTLL-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0330200.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0330200.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0330200.1 6 qTLWR-6 Morphological trait Culm/leaf RM204 RM217
Osa06LNT0330200.1 6 d4 Morphological trait Dwarf nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus