Transcript

Sequence

>Osa01LNT0030100.1

CCTCCATGCGTGCCCATCTCCGCCTCCAGTTGCCTCACCATGCCTTGCATCTGCACCAGCTCCGCCACCAGCGCGCACCTCCCGGAGCCGCCGTACCTGCTGCCGTCCGACGACGAGCCCTCCATCCGTCACACACAGCAAGCTCGATCGATCGGTCACTCACTCACTCTCACCAGCCAGCTGCGCCGCTGCTCATGCCACTCGCTCGCTAGCTAAGCCAGCCGGTCGCGTGTGTCGCCGAGACGATGTGTGTG

Coding Potentia

Explanation	CPC Score
noncoding	-1.01002

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0030100.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0030100.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0030100.1	1	yld1.1	Physiological trait	Source activity	RM5	RG462
Osa01LNT0030100.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0030100.1	1	Qstv1	Resistance or Tolerance	Other disease resistance	nan	nan
Osa01LNT0030100.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0030100.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0030100.1	1	QPh1b	Resistance or Tolerance	Submergency tolerance	RZ527	RZ154
Osa01LNT0030100.1	1	nan	Morphological trait	Seed	CDO118	CDO455

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus