>Osa06LNT0330300.1

TTTGTAGAAATTAAATCGAATCGATCCTGATGAAAAAAAAGTTATACAAAATTCATGCAGTCAGAAGGAGGCCTAGCATTCCCTGCATTCTGCACAGAACTTCCGGAAACCCAGCATAGAAGCCACATGTGACACAGAATTTTGTACAGTGGGAGACTTACCCATAGTCTCACCCTTGGCAGGTGATCCATCACAGTTTTCTTTATGTTACACCATATGGAATGAGGGGATATACCCAACTTACATAGTGATATGCACACTGTAATAATATAATGGTAGAGAAATTTTCCCACGAACACTGACACCACCTGAAGGTCGTCATTTACAAGCAGGTGAAGGGTAAGGGAATAGAGAGAAAAATAATAAAAAGGATAAATAGCCAGAGAGATCCCAGAGATCTCTGTTATTAACTGTCAAGTATCTCAAACTCTGAATCCTCAATGACATCCCATGATTCCTTCTTGGATAGTGAAGCAGGTGGAGTTGGTTGTGGAGGCCGGTGGCTATAGTCAGTAGAAGATGCAGGTTTTCTTCTTACTGAATCCCGCCGGACTGAGGAGCTAGCATAGTGGAGGCTCCTCCGATCTGACAGAAGTGAATCCATGTATTTGTCCATGACAACAATATGGGCACTGTCAGCGTCGCTAAGCTCCTCACCGCTAATGTATCTTCTACCATCTCTAGAAGATTCCACATCCGAAGGTATTTCGGACCACTGATCCATGCTTTGCTCAGATTTTGACTTTGCAAACACCCATTGGTCAATGCTTTGATTGGATCTTGTTTTTATCAACACACGATCATCTGGCGATTGATAACCCTCTTGAGTGCTTTTCACACTTTCAATTTCACAAACATTAGGCGCAGAATCAGACTCTATCTCATTGACGTGATGAACAGAACCTGGTACATTCTCATCTACCTCTGAAGTATGTTCAGTAAGGTTCGACTCAAGCAGCGTAAAGTAGATCTTCCAGAATACATCAATATCCATGTAAGAAGGGCAGAGCCTAGCTCTCAGAGATGCTAAGTCAGGTACAAGTTTTTCAATGGCTTCCATATGATCCCTTTGGATATCGGAGATTATAGAATTCTCATCGAGCGCGAGCACGGGGAAGTCAATCCACGCCTCGGGCCGCGCCGCAAGGGCCTGCGCCGCCCCGACGACGTCATCAGCGACATCAGCAGCGGCAGCGGCAGCAGGGGAAGGGGAAGGAGAGGAGGCCGTGGAGGAAGCGGCGCGCGGGGACTCCGCGGTGGTGGCGGAAGCGGAGGCGGAGGCGGAGGAGAAGGCAGGTTCGGGGAGGGCGGCGCGGCGGGCGAAGCCACCGGTGAAGGAGCCGCCGATCTCGGCGAGGTCGGCGAGGATGCCGGCGAGGATGGAGGGGGAGGGCGGCGTGGCGGGGCGCGGGGAAGGGGAGCGGCGGTGGTGGTGGTGGCGGTGGGTGGGGGTGGCGGGCGGGGAGTCGACGGTGAGGTGGGCGGGGCCGAGGAGCGGGTGGAGGAAGCAGGCGATGTCGAGGATGTGGCGGCCTAGCTCGGTGAGGTCGTCCCGGACGCCGCGGAACCCCCGCGCCATCCCTCCGCCCTAGGGTTAGGGCTCCGGCGACGGCGGCGGCGGAAGAGGGACTCTGCGGCGGCGGCGGCGGCGGCGGAAGAGCGGGTTTTCCTCCTTTATTTGCTTGCGG

Explanation	CPC Score
noncoding (weak)	-0.447476

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0330300.1	6	3795406	T	C
Osa06LNT0330300.1	6	3795495	A	C
Osa06LNT0330300.1	6	3797265	T	C
Osa06LNT0330300.1	6	3797779	A	G
Osa06LNT0330300.1	6	3795701	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0330300.1	osa-miR5541	Cleavage	5.0	17.471	1	21
Osa06LNT0330300.1	osa-miR393a	Cleavage	2.5	14.176	1	21
Osa06LNT0330300.1	osa-miR393b-5p	Cleavage	2.5	14.176	1	22
Osa06LNT0330300.1	osa-miR1846a-3p	Cleavage	4.5	17.655	1	21
Osa06LNT0330300.1	osa-miR1846b-3p	Cleavage	4.5	17.655	1	21
Osa06LNT0330300.1	osa-miR1860-3p	Cleavage	5.0	17.083	1	22
Osa06LNT0330300.1	osa-miR2103	Cleavage	4.0	19.212	1	22
Osa06LNT0330300.1	osa-miR5486	Cleavage	4.5	24.062	1	21
Osa06LNT0330300.1	osa-miR5542	Translation	3.5	14.87	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0330300.1	6	qSLL-6	Morphological trait	Culm/leaf	RM204	RM217
Osa06LNT0330300.1	6	qTLL-6	Morphological trait	Culm/leaf	RM204	RM217
Osa06LNT0330300.1	6	qTLWR-6	Morphological trait	Culm/leaf	RM204	RM217
Osa06LNT0330300.1	6	alk6-1	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0330300.1	6	hr6	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0330300.1	6	d4	Morphological trait	Dwarf	nan	nan
Osa06LNT0330300.1	6	Qbph6	Resistance or Tolerance	Insect resistance	RM510	RM314
Osa06LNT0330300.1	6	AsTol	Resistance or Tolerance	Other soil stress tolerance	RZ516	RG213
Osa06LNT0330300.1	6	En-Se1	Physiological trait	Flowering	nan	nan
Osa06LNT0330300.1	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0330300.1	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0330300.1	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0330300.1	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0330300.1	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0330300.1	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0330300.1	6	Lhd1(t)	Physiological trait	Flowering	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus