© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0330600.1
ATCGGACAAAAAGAACTGATGACGGTAGTCAGTTGGCAATTAAAATAGTTATATTATTTACATGGCAGGCATACAAGTGAGTGAGACAAATAATTTATCTCGTAGAACACTCTTGCAAGCCAAAAGGTACATAATAGGGCATAGAGGTGCATTGATATATTTTCTAGCAGAACACCTGCTGATGGAAAAATGAAATTTATAATGATCATTGAGATGGCTGGATGCTTGGTTCTTCGTATGATGGCAGGAAGAAACCATGGATACCAGAAGGCATATATTAGAGGAAAGTTGAGTGTGAAGATCACATAAAATAGACAGGAAAGAACTGAACTATTGTAATAATACCAACTGCGTGCTGCTTTGACAAGGCAGAGGTTTCAGATAAAGAATCCTCTTGATATGTTCCCGAAAATTCCATTCCAACTTAGATCAAGAATATCCAGCTTCATTTTGCTTAATCTTTGGACAGTAAAGTCATTCTTTATGGCGTTCCCACCGAGGAATGGGGAACGCAGAGATGCAAGTCCAACCAAGGGCATGATACTACTATCATTCAACTCATTTTCAGATAGATCGAGGATTTCCAGTTGGCGTAAATTAGACCATACTTCAAAACCTGCACCAGGCATGCATCCCGCGATGCCGGCATTTCCCAAGGACAAATTCTGCAGCTCACGGAATGGAAGGAACATACTGCAGTTGAGTAGGCCATACCACGACGGATAAGCTGCATCAAGATCAAGGGCCGTGACACGCCCTGTGATGGAGCTGCAGGTCACCCTCTCCCACCGGCAGCAATCTCTGCTACTCCAGTCAGGCGGATTGCCAGCCGGCCAAAGGAACGCATCGCAAATGTCCATAAGATGTTTCCTCTCTTCGTGCAAACAACTGTCGCAGACCACCAAGGTCAGCAGAACCAAGCAACACCAAATGCAGGGGTTCCTCATGGCCACCACAATTCCCAATCCTCAAATACGCTAGCTCTCAAGAAATTTAACCCACAGGCACCGATTTTATACTGATGGTCTCGGTGCATCACACTCAATTACCACTACCAGCAGATTCCACACTCCCCATGGTGGCATCAAGCAGGTCGCTGATTTCGACGGTAATGACTGCCTACATTATCTCTTAGTAGAAGAAAAGCCTGAGATTTCTTTATTCCAGCAAGCGAGTGGGGCTTGGACTTGGAGTCTTGGATAAGTGGACTGCCGGCATGCTTGCTCCATGGTAGCAATGACTAAATCCACGAGAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAAAAAAACAAAGTAGTTTCCTCGGAGATGGATCGGTCCTGGTCATCTGCAGACTGCTCACTTTTGGACCCAAAACCTCGCATTGGGGAATAGCAATCAGTCTGGTCATCCACCTTCATAAAAAAAAAAAAAGTCTGGTCATCCACTCAACCAGCCCGTTCTTGGGGGCAACTGCGTCGACGCCATCGTGGAAGGAATTGAAGAAATCGGCGCCAACGGGGAGGGTTGAGGCCGGCCAGGGGCACCGCGGGGCCCCCGCCGCCGGCAGCCAGGAATTGGCCTTCGATGCCATCGAGGAAGGAATTGAAGAAGTTGGCGCCGACGGGGAGGGGTCGCGGTCGATGCCGCCGCCGCCGGCAACCAGGGCAGCATCGGCATCGGCGTCGGCGTCGGCGTCGGCGTAGGGGTGGCGTTGTGAAGGCCCATCGTGTAGAGGCCTAATATTGAATAAGTCTATTTTGACTCCTTCAACTCTTGCCATT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0330600.1 | 6 | 3956421 | A | G |
| Osa06LNT0330600.1 | 6 | 3956544 | G | A |
| Osa06LNT0330600.1 | 6 | 3956957 | A | G |
| Osa06LNT0330600.1 | 6 | 3956978 | C | T |
| Osa06LNT0330600.1 | 6 | 3957696 | A | T |
| Osa06LNT0330600.1 | 6 | 3957825 | A | G |
| Osa06LNT0330600.1 | 6 | 3958488 | T | C |
| Osa06LNT0330600.1 | 6 | 3958781 | A | G |
| Osa06LNT0330600.1 | 6 | 3959567 | A | G |
| Osa06LNT0330600.1 | 6 | 3959911 | A | G |
| Osa06LNT0330600.1 | 6 | 3960008 | T | C |
| Osa06LNT0330600.1 | 6 | 3960280 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0330600.1 | DTM_#DNAt_MULE_japo_Os0067 | Chr6 | - | 3960028 | 3960170 | 142 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0330600.1 | osa-miR160a-3p | Cleavage | 4.5 | 18.221 | 1 | 21 |
| Osa06LNT0330600.1 | osa-miR160b-3p | Cleavage | 4.5 | 18.221 | 1 | 21 |
| Osa06LNT0330600.1 | osa-miR160d-3p | Cleavage | 3.0 | 18.221 | 1 | 21 |
| Osa06LNT0330600.1 | osa-miR160e-3p | Translation | 4.0 | 18.221 | 1 | 21 |
| Osa06LNT0330600.1 | osa-miR1423-5p | Cleavage | 4.0 | 24.097 | 1 | 24 |
| Osa06LNT0330600.1 | osa-miR1849 | Cleavage | 4.5 | 20.461 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0330600.1 | 6 | AsTol | Resistance or Tolerance | Other soil stress tolerance | RZ516 | RG213 |
| Osa06LNT0330600.1 | 6 | qSLL-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0330600.1 | 6 | nan | Morphological trait | Seed | RG138 | RZ398 |
| Osa06LNT0330600.1 | 6 | nan | Morphological trait | Panicle/flower | RG138 | RZ398 |
| Osa06LNT0330600.1 | 6 | nan | Physiological trait | Source activity | RG138 | RZ398 |
| Osa06LNT0330600.1 | 6 | nan | Morphological trait | Panicle/flower | RG138 | RZ398 |
| Osa06LNT0330600.1 | 6 | nan | Physiological trait | Source activity | RG138 | RZ398 |
| Osa06LNT0330600.1 | 6 | nan | Morphological trait | Seed | RG138 | RZ398 |
| Osa06LNT0330600.1 | 6 | qTLL-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0330600.1 | 6 | qTLWR-6 | Morphological trait | Culm/leaf | RM204 | RM217 |
| Osa06LNT0330600.1 | 6 | Lhd1(t) | Physiological trait | Flowering | nan | nan |
| Osa06LNT0330600.1 | 6 | d4 | Morphological trait | Dwarf | nan | nan |
| Osa06LNT0330600.1 | 6 | alk6-1 | Physiological trait | Eating quality | RM190 | RM253 |
| Osa06LNT0330600.1 | 6 | hr6 | Physiological trait | Eating quality | RM190 | RM253 |
| Osa06LNT0330600.1 | 6 | Qbph6 | Resistance or Tolerance | Insect resistance | RM510 | RM314 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)