>Osa06LNT0330600.2

ATCGGACAAAAAGAACTGATGACGGTAGTCAGTTGGCAATTAAAATAGTTATATTATTTACATGGCAGGCATACAAGTGAGTGAGACAAATAATTTATCTCGTAGAACACTCTTGCAAGCCAAAAGGTACATAATAGGGCATAGAGGTGCATTGATATATTTTCTAGCAGAACACCTGCTGATGGAAAAATGAAATTTATAATGATCATTGAGATGGCTGGATGCTTGGTTCTTCGTATGATGGCAGGAAGAAACCATGGATACCAGAAGGCATATATTAGAGGAAAGTTGAGTGTGAAGATCACATAAAATAGACAGGAAAGAACTGAACTATTGTAATAATACCAACTGCGTGCTGCTTTGACAAGGCAGAGGTTTCAGATAAAGAATCCTGTAATCATGTATGCATTCCTTGTTGATCCAGATCGTTAAATATTTCTTTGTAAACAACATTGTGAGTGCTGGTCACATGCTCAGTTGGACTATTCTCAATTAGAATACGAAGACCATCAGGCGATGTTACACGTGAGAGTGCGACATAAAGTTGTCCATGTGAAAAGACAGGGCTAGGTAAGTAGACACACTTGGTTTGGAACCATCCCTTCGAACATGTTTCCCTTAAGCAATAGTATTCGTAACTCTGGAAAAGTTTCATCTATACATCTTGGGATTGCACCACTGAATTGGTTATATCGCAGATCCATTGTCTTCAAATTAGCACCGAATGGCCAGACAAGGGGAAATGTTCCATTCAGTTCATTCTCACTTAAGTGGAGATATGTCAAATTGGGCAAAGAAGGCAAGGGGCCAGACAGATGGTTTTTGGACAGATCAAGAAATTGAAGATTCAAAAGGCTGGATAGACCTGTTGGAATTGATCCAGTTAAATGATTCCCTCTTAGATTGAGGATAAAAAATAGATGATTTGAAGCTATGCAATTTGGAATGGATCCAGTCAACTTGTTATTGCTAAAATCAACCACACCAAGATTCACGTTGGTGCAAATGCTAGTAGGAATCTCCCCTGAGATATTATTATCGTTTAGCACTAGATGATTCATCGACATAGTTGTAGGAAAACTAGCAGTTATTTCACCCGATATGTTGTTGTAAGATAAATCTAAAGTTGAAAGATTCTCCAAGTGACTAACGGCTGAAGGAAATATGCCTTGAAAAAAATTCTTCGATAAGTTTAGGTAGCTCAAATTAGGGAATGTGATGTTGATGTCCACAGGAAGGTCCCCGCTTAGCCTGTTATAAGATGCATCTAACCATGATAAGTTCTGATTTACTGTGGAAGGAAGAATGAGTGATCCAACAAATGAGTTATGTTTCACACTCAAGTATGATAGATATATATTATTCTCCAGTAACCACGTCGGGAAATGACCACTTAGATTATTGTTCGAAACATCAATTAGGTATAATCCGTGCTGGTGTGATAAGAAACTTGGTACAACACCAGAATTGGCATTCAGGTTGCAGTTTGATAGTTCAAGAACCTGAAGCTGACTAGATATATTTGCTTCTGGATTCTCAGTTTGCACTTGGAAGCTGGCACTGTTGCTTGATAGTCTCAGGTATTTCAGTTGGAGATGATTTGAAAAAGAGTTTAGGAGTAGCAGACCTTCAAGCTGGTTATGGGAAAGGGAAAGTTGCTCAAGTAACGTCATGTTTGCGAACGAAATAGTGGGGAACCTTGCCGTTAAGAGATTATTTGACAGATCAAGTACTCTGAGAAAAGTTAGATTTCTGATACATGATGGGAGCACCCCAAAGAAAAAATTTCCGTTTAGATGCAATTCTCGAAGACTTGTCATATTGCAAACAGCTCTTGATATGTTCCCGAAAATTCCATTCCAACTTAGATCAAGAATATCCAGCTTCATTTTGCTTAATCTTTGGACAGTAAAGTCATTCTTTATGGCGTTCCCACCGAGGAATGGGGAACGCAGAGATGCAAGTCCAACCAAGGGCATGATACTACTATCATTCAACTCATTTTCAGATAGATCGAGGATTTCCAGTTGGCGTAAATTAGACCATACTTCAAAACCTGCACCAGGCATGCATCCCGCGATGCCGGCATTTCCCAAGGACAAATTCTGCAGCTCACGGAATGGAAGGAACATACTGCAGTTGAGTAGGCCATACCACGACGGATAAGCTGCATCAAGATCAAGGGCCGTGACACGCCCTGTGATGGAGCTGCAGGTCACCCTCTCCCACCGGCAGCAATCTCTGCTACTCCAGTCAGGCGGATTGCCAGCCGGCCAAAGGAACGCATCGCAAATGTCCATAAGATGTTTCCTCTCTTCGTGCAAACAACTGTCGCAGACCACCAAGGTCAGCAGAACCAAGCAACACCAAATGCAGGGGTTCCTCATGGCCACCACAATTCCCAATCCTCAAATACGCTAGCTCTCAAGAAATTTAACCCACAGGCACCGATTTTATACTGATGGTCTCGGTGCATCACACTCAATTACCACTACCAGCAGATTCCACACTCCCCATGGTGGCATCAAGCAGGTCGCTGATTTCGACGGTAATGACTGCCTACATTATCTCTTAGTAGAAGAAAAGCCTGAGATTTCTTTATTCCAGCAAGCGAGTGGGGCTTGGACTTGGAGTCTTGGATAAGTGGACTGCCGGCATGCTTGCTCCATGGTAGCAATGACTAAATCCACGAGAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAAAAAAACAAAGTAGTTTCCTCGGAGATGGATCGGTCCTGGTCATCTGCAGACTGCTCACTTTTGGACCCAAAACCTCGCATTGGGGAATAGCAATCAGTCTGGTCATCCACTGCGTCGACGCCATCGTGGAAGGAATTGAAGAAATCGGCGCCAACGGGGAGGGTTGAGGCCGGCCAGGGGCACCGCGGGGCCCCCGCCGCCGGCAGCCAGGAATTGGCCTTCGATGCCATCGAGGAAGGAATTGAAGAAGTTGGCGCCGACGGGGAGGGGTCGCGGTCGATGCCGCCGCCGCCGGCAACCAGGGCAGCATCGGCATCGGCGTCGGCGTCGGCGTCGGCGTAGGGGTGGCGTTGTGAAGGCCCATCGTGTAGAGGCCTAATATTGAATAAGTCTATTTTGACTCCTTCAACTCTTGCCATT

Explanation	CPC Score
noncoding (weak)	-0.895539

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0330600.2	6	3956421	A	G
Osa06LNT0330600.2	6	3956957	A	G
Osa06LNT0330600.2	6	3956978	C	T
Osa06LNT0330600.2	6	3957696	A	T
Osa06LNT0330600.2	6	3957825	A	G
Osa06LNT0330600.2	6	3958488	T	C
Osa06LNT0330600.2	6	3958781	A	G
Osa06LNT0330600.2	6	3959567	A	G
Osa06LNT0330600.2	6	3959911	A	G
Osa06LNT0330600.2	6	3960008	T	C
Osa06LNT0330600.2	6	3960280	A	G
Osa06LNT0330600.2	6	3956544	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa06LNT0330600.2	DTM_#DNAt_MULE_japo_Os0067	Chr6	-	3960028	3960170	142

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0330600.2	osa-miR5543	Translation	5.0	17.139	1	21
Osa06LNT0330600.2	osa-miR5795	Cleavage	5.0	13.983	1	22
Osa06LNT0330600.2	osa-miR5831	Translation	5.0	16.053	1	24
Osa06LNT0330600.2	osa-miR160a-3p	Cleavage	4.5	18.221	1	21
Osa06LNT0330600.2	osa-miR160b-3p	Cleavage	4.5	18.221	1	21
Osa06LNT0330600.2	osa-miR160d-3p	Cleavage	3.0	18.221	1	21
Osa06LNT0330600.2	osa-miR160e-3p	Translation	4.0	18.221	1	21
Osa06LNT0330600.2	osa-miR1423-5p	Cleavage	4.0	24.097	1	24
Osa06LNT0330600.2	osa-miR1442	Cleavage	5.0	13.936	1	20
Osa06LNT0330600.2	osa-miR1849	Cleavage	4.5	20.461	1	21
Osa06LNT0330600.2	osa-miR1860-3p	Translation	4.5	18.927	1	22
Osa06LNT0330600.2	osa-miR1320-5p	Cleavage	5.0	12.185	1	21
Osa06LNT0330600.2	osa-miR2105	Cleavage	4.0	15.451	1	20
Osa06LNT0330600.2	osa-miR5161	Translation	5.0	12.19	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0330600.2	6	Qbph6	Resistance or Tolerance	Insect resistance	RM510	RM314
Osa06LNT0330600.2	6	AsTol	Resistance or Tolerance	Other soil stress tolerance	RZ516	RG213
Osa06LNT0330600.2	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0330600.2	6	Lhd1(t)	Physiological trait	Flowering	nan	nan
Osa06LNT0330600.2	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0330600.2	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0330600.2	6	qSLL-6	Morphological trait	Culm/leaf	RM204	RM217
Osa06LNT0330600.2	6	nan	Morphological trait	Panicle/flower	RG138	RZ398
Osa06LNT0330600.2	6	nan	Physiological trait	Source activity	RG138	RZ398
Osa06LNT0330600.2	6	nan	Morphological trait	Seed	RG138	RZ398
Osa06LNT0330600.2	6	qTLL-6	Morphological trait	Culm/leaf	RM204	RM217
Osa06LNT0330600.2	6	qTLWR-6	Morphological trait	Culm/leaf	RM204	RM217
Osa06LNT0330600.2	6	hr6	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0330600.2	6	alk6-1	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0330600.2	6	d4	Morphological trait	Dwarf	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus